PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2HWD
Biol. Unit 1
Info
Asym.Unit (115 KB)
Biol.Unit 1, α-C (6.2 MB)
Biol.Unit 1 (6.2 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN HRV14 AND HRV1A
Authors
:
K. H. Kim, M. G. Rossmann
Date
:
25 Jan 94 (Deposition) - 30 Sep 94 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Rhinovirus Coat Protein, Icosahedral Virus, Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. Kim, P. Willingmann, Z. X. Gong, M. J. Kremer, M. S. Chapman, I. Minor, M. A. Oliveira, M. G. Rossmann, K. Andries, G. D. Diana, F. J. Dutko, M. A. Mckinlay, D. C. Pevear
A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In Hrv14 And Hrv1A.
J. Mol. Biol. V. 230 206 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 60)
Info
All Hetero Components
1a: 5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-... (W91a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
W91
60
Ligand/Ion
5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PROPYL)-3-METHYL ISOXAZOLE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO 1:32 , LEU 1:33 , ASN 1:44 , VAL 1:45 , GLN 1:46 , ASP 1:49 , ALA 1:50 , LEU 1:103 , ILE 1:125 , TYR 1:145 , TYR 1:147 , MET 1:217
BINDING SITE FOR RESIDUE W91 1 700
[
close Site info
]
SAPs(SNPs)/Variants
(5, 300)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLG_HRV1A_002 (N51N, chain 2, )
2: VAR_POLG_HRV1A_004 (T92T, chain 3, )
3: VAR_POLG_HRV1A_005 (I184I, chain 1, )
4: VAR_POLG_HRV1A_003 (C221C, chain 2, )
5: VAR_POLG_HRV1A_006 (L231L, chain 1, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HRV1A_002
*
D
120
N
POLG_HRV1A
---
---
2
N
51
N
2
UniProt
VAR_POLG_HRV1A_004
*
Q
424
T
POLG_HRV1A
---
---
3
T
92
T
3
UniProt
VAR_POLG_HRV1A_005
*
L
754
I
POLG_HRV1A
---
---
1
I
184
I
4
UniProt
VAR_POLG_HRV1A_003
*
S
290
C
POLG_HRV1A
---
---
2
C
221
C
5
UniProt
VAR_POLG_HRV1A_006
*
H
801
L
POLG_HRV1A
---
---
1
L
231
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2hwd_1 (4:,2:)
1b: SCOP_d2hwd1_ (1:)
1c: SCOP_d2hwd3_ (3:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]
(4)
1a
d2hwd.1
4:,2:
1b
d2hwd1_
1:
1c
d2hwd3_
3:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hwd300 (3:1-238)
1b: CATH_2hwd200 (2:11-263)
1c: CATH_2hwd100 (1:5-287)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 14. Organism_taxid: 12131.
(29)
1a
2hwd300
3:1-238
1b
2hwd200
2:11-263
1c
2hwd100
1:5-287
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain 1
Chain 2
Chain 3
Chain 4
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
Asymmetric Unit 25
Asymmetric Unit 26
Asymmetric Unit 27
Asymmetric Unit 28
Asymmetric Unit 29
Asymmetric Unit 30
Asymmetric Unit 31
Asymmetric Unit 32
Asymmetric Unit 33
Asymmetric Unit 34
Asymmetric Unit 35
Asymmetric Unit 36
Asymmetric Unit 37
Asymmetric Unit 38
Asymmetric Unit 39
Asymmetric Unit 40
Asymmetric Unit 41
Asymmetric Unit 42
Asymmetric Unit 43
Asymmetric Unit 44
Asymmetric Unit 45
Asymmetric Unit 46
Asymmetric Unit 47
Asymmetric Unit 48
Asymmetric Unit 49
Asymmetric Unit 50
Asymmetric Unit 51
Asymmetric Unit 52
Asymmetric Unit 53
Asymmetric Unit 54
Asymmetric Unit 55
Asymmetric Unit 56
Asymmetric Unit 57
Asymmetric Unit 58
Asymmetric Unit 59
Asymmetric Unit 60
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (6.2 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2HWD
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
