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2HWD
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1, α-C (6.2 MB)
Biol.Unit 1 (6.2 MB)
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(1)
Title
:
A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN HRV14 AND HRV1A
Authors
:
K. H. Kim, M. G. Rossmann
Date
:
25 Jan 94 (Deposition) - 30 Sep 94 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Rhinovirus Coat Protein, Icosahedral Virus, Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. Kim, P. Willingmann, Z. X. Gong, M. J. Kremer, M. S. Chapman, I. Minor, M. A. Oliveira, M. G. Rossmann, K. Andries, G. D. Diana, F. J. Dutko, M. A. Mckinlay, D. C. Pevear
A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In Hrv14 And Hrv1A.
J. Mol. Biol. V. 230 206 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-... (W91a)
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No.
Name
Count
Type
Full Name
1
W91
1
Ligand/Ion
5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PROPYL)-3-METHYL ISOXAZOLE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO 1:32 , LEU 1:33 , ASN 1:44 , VAL 1:45 , GLN 1:46 , ASP 1:49 , ALA 1:50 , LEU 1:103 , ILE 1:125 , TYR 1:145 , TYR 1:147 , MET 1:217
BINDING SITE FOR RESIDUE W91 1 700
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_HRV1A_002 (N51N, chain 2, )
2: VAR_POLG_HRV1A_004 (T92T, chain 3, )
3: VAR_POLG_HRV1A_005 (I184I, chain 1, )
4: VAR_POLG_HRV1A_003 (C221C, chain 2, )
5: VAR_POLG_HRV1A_006 (L231L, chain 1, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HRV1A_002
*
D
120
N
POLG_HRV1A
---
---
2
N
51
N
2
UniProt
VAR_POLG_HRV1A_004
*
Q
424
T
POLG_HRV1A
---
---
3
T
92
T
3
UniProt
VAR_POLG_HRV1A_005
*
L
754
I
POLG_HRV1A
---
---
1
I
184
I
4
UniProt
VAR_POLG_HRV1A_003
*
S
290
C
POLG_HRV1A
---
---
2
C
221
C
5
UniProt
VAR_POLG_HRV1A_006
*
H
801
L
POLG_HRV1A
---
---
1
L
231
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2hwd_1 (4:,2:)
1b: SCOP_d2hwd1_ (1:)
1c: SCOP_d2hwd3_ (3:)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]
(4)
1a
d2hwd.1
4:,2:
1b
d2hwd1_
1:
1c
d2hwd3_
3:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hwd300 (3:1-238)
1b: CATH_2hwd200 (2:11-263)
1c: CATH_2hwd100 (1:5-287)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 14. Organism_taxid: 12131.
(29)
1a
2hwd300
3:1-238
1b
2hwd200
2:11-263
1c
2hwd100
1:5-287
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Pfam Domains
(0, 0)
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Asym.Unit (115 KB)
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