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2HTH
Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR UBIQUITIN RECOGNITION BY THE HUMAN EAP45/ESCRT-II GLUE DOMAIN
Authors
:
S. L. Alam, F. G. Whitby, C. P. Hill, W. I. Sundquist
Date
:
25 Jul 06 (Deposition) - 24 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glue Domain, Ph Domain, Protein Sorting, Viral Budding, Ubiquitin Complex, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Alam, C. Langelier, F. G. Whitby, S. Koirala, H. Robinson, C. P. Hill, W. I. Sundquist
Structural Basis For Ubiquitin Recognition By The Human Escrt-Ii Eap45 Glue Domain.
Nat. Struct. Mol. Biol. V. 13 1029 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-73,A:1-73,-|-|A:1-73,-|-|-|-|-...)
2: UBIQUITIN_1 (A:27-52,A:27-52,-|-|A:27-52,-|-|-|...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
1
A:1-73
RL40_HUMAN
1-76
1
A:1-73
UBB_HUMAN
1-76
77-152
153-228
1
-
-
A:1-73
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
A:1-73
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
1
A:27-52
RL40_HUMAN
27-52
1
A:27-52
UBB_HUMAN
27-52
103-128
179-204
1
-
-
A:27-52
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
A:27-52
[
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Exons
(6, 6)
Info
All Exons
Exon 1.2 (A:1-73)
Exon 2.1b (B:3-32)
Exon 2.3 (B:33-55)
Exon 2.4 (B:56-79)
Exon 2.5a (B:79-117)
Exon 2.6b (B:118-131)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
3: Boundary -/2.1b
4: Boundary 2.1b/2.3
5: Boundary 2.3/2.4
6: Boundary 2.4/2.5a
7: Boundary 2.5a/2.6b
8: Boundary 2.6b/2.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
1.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
1
A:1-73
73
2.1b
ENST00000378060
1b
ENSE00001826219
chr13:
53024757-53024634
124
VPS36_HUMAN
1-32
32
1
B:3-32
30
2.3
ENST00000378060
3
ENSE00000923576
chr13:
53016580-53016512
69
VPS36_HUMAN
33-55
23
1
B:33-55
23
2.4
ENST00000378060
4
ENSE00000923575
chr13:
53013303-53013233
71
VPS36_HUMAN
56-79
24
1
B:56-79
24
2.5a
ENST00000378060
5a
ENSE00000923574
chr13:
53010539-53010425
115
VPS36_HUMAN
79-117
39
1
B:79-117
39
2.6b
ENST00000378060
6b
ENSE00000923573
chr13:
53009017-53008928
90
VPS36_HUMAN
118-147
30
1
B:118-131
14
2.7
ENST00000378060
7
ENSE00000923572
chr13:
53007883-53007797
87
VPS36_HUMAN
148-176
29
0
-
-
2.9b
ENST00000378060
9b
ENSE00001001773
chr13:
53001354-53001322
33
VPS36_HUMAN
177-187
11
0
-
-
2.10
ENST00000378060
10
ENSE00000923571
chr13:
53001201-53001124
78
VPS36_HUMAN
188-213
26
0
-
-
2.11a
ENST00000378060
11a
ENSE00000923570
chr13:
53000201-53000067
135
VPS36_HUMAN
214-258
45
0
-
-
2.12
ENST00000378060
12
ENSE00000923569
chr13:
52997774-52997709
66
VPS36_HUMAN
259-280
22
0
-
-
2.13
ENST00000378060
13
ENSE00000923568
chr13:
52992191-52992127
65
VPS36_HUMAN
281-302
22
0
-
-
2.14
ENST00000378060
14
ENSE00000923567
chr13:
52991276-52991192
85
VPS36_HUMAN
302-330
29
0
-
-
2.15c
ENST00000378060
15c
ENSE00000923566
chr13:
52990228-52990152
77
VPS36_HUMAN
331-356
26
0
-
-
2.16b
ENST00000378060
16b
ENSE00001839838
chr13:
52990058-52986839
3220
VPS36_HUMAN
356-386
31
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2hthb1 (B:3-131)
2a: SCOP_d2htha_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
VPS36 N-terminal domain-like
(3)
Protein domain
:
Vacuolar protein sorting protein 36, VPS36
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2hthb1
B:3-131
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
2a
d2htha_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2hthA00 (A:1-73)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2hthA00
A:1-73
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (42 KB)
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