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2HTG
Asym. Unit
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Asym.Unit (504 KB)
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Models
(66 )
Title
:
STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF TM VII OF THE NHE1 ISOFORM OF THE NA+/H+ EXCHANGER
Authors
:
J. K. Rainey, J. Ding, C. Xu, L. Fliegel, B. D. Sykes
Date
:
25 Jul 06 (Deposition) - 08 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (66 x)
Keywords
:
Membrane Protein, Transmembrane Segment, Helix-Kink-Helix
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ding, J. K. Rainey, C. Xu, B. D. Sykes, L. Fliegel
Structural And Functional Characterization Of Transmembrane Segment Vii Of The Na(+)/H(+) Exchanger Isoform 1
J. Biol. Chem. V. 281 29817 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: AMINO GROUP (NH2a)
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Label:
No.
Name
Count
Type
Full Name
1
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:275 , LYS A:276
BINDING SITE FOR RESIDUE NH2 A 277
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.4b (A:250-271)
Exon 1.5 (A:272-277)
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All Exon Boundaries
1: Boundary 1.3a/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000263980
3a
ENSE00001322091
chr1:
27481401-27480474
928
SL9A1_HUMAN
1-118
118
0
-
-
1.4b
ENST00000263980
4b
ENSE00000956128
chr1:
27440777-27440317
461
SL9A1_HUMAN
118-271
154
1
A:250-271
22
1.5
ENST00000263980
5
ENSE00000902176
chr1:
27436268-27436018
251
SL9A1_HUMAN
272-355
84
1
A:272-277
6
1.6
ENST00000263980
6
ENSE00000956129
chr1:
27434356-27434139
218
SL9A1_HUMAN
355-428
74
0
-
-
1.7a
ENST00000263980
7a
ENSE00000956130
chr1:
27432578-27432376
203
SL9A1_HUMAN
428-495
68
0
-
-
1.8b
ENST00000263980
8b
ENSE00000760795
chr1:
27429803-27429714
90
SL9A1_HUMAN
496-525
30
0
-
-
1.9b
ENST00000263980
9b
ENSE00000760796
chr1:
27429234-27429164
71
SL9A1_HUMAN
526-549
24
0
-
-
1.10
ENST00000263980
10
ENSE00001614589
chr1:
27429049-27428876
174
SL9A1_HUMAN
549-607
59
0
-
-
1.11
ENST00000263980
11
ENSE00000760801
chr1:
27428621-27428507
115
SL9A1_HUMAN
607-645
39
0
-
-
1.12
ENST00000263980
12
ENSE00000760804
chr1:
27428317-27428216
102
SL9A1_HUMAN
646-679
34
0
-
-
1.13
ENST00000263980
13
ENSE00000760806
chr1:
27427766-27427694
73
SL9A1_HUMAN
680-704
25
0
-
-
1.14b
ENST00000263980
14b
ENSE00001462442
chr1:
27427135-27425306
1830
SL9A1_HUMAN
704-815
112
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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