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2HTE
Biol. Unit 1
Info
Asym.Unit (157 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM P. FALCIPARUM IN COMPLEX WITH 5'-METHYLTHIOADENOSINE
Authors
:
W. Qiu, A. Dong, H. Ren, H. Wu, G. Wasney, M. Vedadi, J. Lew, I. Kozieradsk A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. N. Plotni A. Bochkarev, R. Hui, Structural Genomics Consortium (Sgc)
Date
:
25 Jul 06 (Deposition) - 08 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Transferase, Spermidine Synthase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
1b: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGb)
2a: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAa)
2b: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAb)
2c: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAc)
3a: SULFATE ION (SO4a)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
4j: UNKNOWN ATOM OR ION (UNXj)
4k: UNKNOWN ATOM OR ION (UNXk)
4l: UNKNOWN ATOM OR ION (UNXl)
4m: UNKNOWN ATOM OR ION (UNXm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1PG
2
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
MTA
2
Ligand/Ion
5'-DEOXY-5'-METHYLTHIOADENOSINE
3
SO4
-1
Ligand/Ion
SULFATE ION
4
UNX
10
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC5 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
LYS A:21
BINDING SITE FOR RESIDUE UNX A 3002
2
AC4
SOFTWARE
GLN A:34 , GLN A:55 , GLY A:86 , GLY A:87 , ASP A:89 , CYS A:108 , GLU A:109 , ILE A:110 , VAL A:114 , ASP A:140 , ALA A:141 , ASP A:158
BINDING SITE FOR RESIDUE MTA A 4000
3
AC7
SOFTWARE
HIS A:198
BINDING SITE FOR RESIDUE UNX A 3004
4
BC1
SOFTWARE
SER A:7 , PHE A:9 , SER A:19
BINDING SITE FOR RESIDUE 1PG A 6000
5
BC5
SOFTWARE
LYS A:59 , TRP A:196 , UNX A:3009 , HOH A:6057
BINDING SITE FOR RESIDUE UNX A 3008
6
BC6
SOFTWARE
UNX A:3008 , UNX A:3010
BINDING SITE FOR RESIDUE UNX A 3009
7
BC7
SOFTWARE
UNX A:3009 , HOH A:6007
BINDING SITE FOR RESIDUE UNX A 3010
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2htea_ (A:)
1b: SCOP_d2hteb_ (B:)
1c: SCOP_d2htec_ (C:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Plasmodium falciparum [TaxId: 36329]
(10)
1a
d2htea_
A:
1b
d2hteb_
B:
1c
d2htec_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hteC02 (C:60-283)
1b: CATH_2hteB02 (B:60-281)
1c: CATH_2hteA02 (A:60-283)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7.
(7)
1a
2hteC02
C:60-283
1b
2hteB02
B:60-281
1c
2hteA02
A:60-283
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (157 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
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Header - Biol.Unit 2
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