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2HTE
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM P. FALCIPARUM IN COMPLEX WITH 5'-METHYLTHIOADENOSINE
Authors
:
W. Qiu, A. Dong, H. Ren, H. Wu, G. Wasney, M. Vedadi, J. Lew, I. Kozieradsk A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. N. Plotni A. Bochkarev, R. Hui, Structural Genomics Consortium (Sgc)
Date
:
25 Jul 06 (Deposition) - 08 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Transferase, Spermidine Synthase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
1b: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGb)
2a: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAa)
2b: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAb)
2c: 5'-DEOXY-5'-METHYLTHIOADENOSINE (MTAc)
3a: SULFATE ION (SO4a)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
4j: UNKNOWN ATOM OR ION (UNXj)
4k: UNKNOWN ATOM OR ION (UNXk)
4l: UNKNOWN ATOM OR ION (UNXl)
4m: UNKNOWN ATOM OR ION (UNXm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PG
2
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
MTA
3
Ligand/Ion
5'-DEOXY-5'-METHYLTHIOADENOSINE
3
SO4
1
Ligand/Ion
SULFATE ION
4
UNX
13
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:198 , GLY B:200 , THR B:201 , LYS B:253 , HOH B:5138
BINDING SITE FOR RESIDUE SO4 B 5000
02
AC2
SOFTWARE
LYS C:3
BINDING SITE FOR RESIDUE UNX C 3001
03
AC3
SOFTWARE
LYS A:21
BINDING SITE FOR RESIDUE UNX A 3002
04
AC4
SOFTWARE
GLN A:34 , GLN A:55 , GLY A:86 , GLY A:87 , ASP A:89 , CYS A:108 , GLU A:109 , ILE A:110 , VAL A:114 , ASP A:140 , ALA A:141 , ASP A:158
BINDING SITE FOR RESIDUE MTA A 4000
05
AC5
SOFTWARE
LYS B:3 , LYS B:21
BINDING SITE FOR RESIDUE UNX B 3003
06
AC6
SOFTWARE
GLN B:34 , GLN B:55 , GLY B:86 , CYS B:108 , GLU B:109 , ILE B:110 , VAL B:114 , ASP B:140 , ALA B:141 , SER B:160 , ASP B:161
BINDING SITE FOR RESIDUE MTA B 4001
07
AC7
SOFTWARE
HIS A:198
BINDING SITE FOR RESIDUE UNX A 3004
08
AC8
SOFTWARE
GLN C:34 , LEU C:50 , GLN C:55 , GLY C:86 , GLY C:87 , ASP C:89 , CYS C:108 , GLU C:109 , ILE C:110 , VAL C:114 , ASP C:140 , ALA C:141 , ASP C:158 , SER C:159 , SER C:160 , PRO C:165 , ALA C:166 , THR C:168 , LEU C:169
BINDING SITE FOR RESIDUE MTA C 4002
09
AC9
SOFTWARE
TRP B:196 , LYS C:59 , UNX C:3007
BINDING SITE FOR RESIDUE UNX C 3005
10
BC1
SOFTWARE
SER A:7 , PHE A:9 , SER A:19
BINDING SITE FOR RESIDUE 1PG A 6000
11
BC2
SOFTWARE
UNX C:3007
BINDING SITE FOR RESIDUE UNX B 3006
12
BC3
SOFTWARE
TRP B:5 , SER B:7 , PHE B:9 , SER B:19 , TRP C:5 , SER C:7 , PHE C:9
BINDING SITE FOR RESIDUE 1PG C 6001
13
BC4
SOFTWARE
UNX B:3006 , UNX C:3005
BINDING SITE FOR RESIDUE UNX C 3007
14
BC5
SOFTWARE
LYS A:59 , TRP A:196 , UNX A:3009 , HOH A:6057
BINDING SITE FOR RESIDUE UNX A 3008
15
BC6
SOFTWARE
UNX A:3008 , UNX A:3010
BINDING SITE FOR RESIDUE UNX A 3009
16
BC7
SOFTWARE
UNX A:3009 , HOH A:6007
BINDING SITE FOR RESIDUE UNX A 3010
17
BC8
SOFTWARE
LYS B:59 , UNX B:3012
BINDING SITE FOR RESIDUE UNX B 3011
18
BC9
SOFTWARE
UNX B:3011 , UNX B:3013 , HOH B:5096
BINDING SITE FOR RESIDUE UNX B 3012
19
CC1
SOFTWARE
LYS B:259 , UNX B:3012
BINDING SITE FOR RESIDUE UNX B 3013
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2htea_ (A:)
1b: SCOP_d2hteb_ (B:)
1c: SCOP_d2htec_ (C:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Plasmodium falciparum [TaxId: 36329]
(10)
1a
d2htea_
A:
1b
d2hteb_
B:
1c
d2htec_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hteC02 (C:60-283)
1b: CATH_2hteB02 (B:60-281)
1c: CATH_2hteA02 (A:60-283)
View:
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7.
(7)
1a
2hteC02
C:60-283
1b
2hteB02
B:60-281
1c
2hteA02
A:60-283
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (157 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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