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2HT9
Asym. Unit
Info
Asym.Unit (47 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
THE STRUCTURE OF DIMERIC HUMAN GLUTAREDOXIN 2
Authors
:
C. Johansson, C. Smee, K. L. Kavanagh, J. Debreczeni, F. Von Delft, O. G C. Arrowsmith, J. Weigelt, A. Edwards, M. Sundstrom, U. Oppermann, St Genomics Consortium (Sgc)
Date
:
25 Jul 06 (Deposition) - 29 Aug 06 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,X
Biol. Unit 1: A,B,X (1x)
Keywords
:
Thioredoxin Fold, Iron-Sulfur Cluster, 2Fe2S, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Johansson, K. L. Kavanagh, O. Gileadi, U. Oppermann
Reversible Sequestration Of Active Site Cysteines In A 2Fe-2S-Bridged Dimer Provides A Mechanism For Glutaredoxin Regulation In Human Mitochondria
J. Biol. Chem. V. 282 3077 2007
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
GSH
2
Ligand/Ion
GLUTATHIONE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:37 , TYR A:39 , THR A:80 , VAL A:81 , GLY A:93 , ALA A:94 , THR A:95 , FES A:1001 , HOH A:1006 , HOH A:1053 , HOH A:1057 , HOH A:1062 , SER B:36 , SER B:38
BINDING SITE FOR RESIDUE GSH A 200
2
AC2
SOFTWARE
SER A:36 , SER A:38 , FES A:1001 , LYS B:34 , CYS B:37 , TYR B:39 , GLN B:69 , THR B:80 , VAL B:81 , PRO B:82 , GLY B:93 , ALA B:94 , THR B:95 , HOH B:1204 , HOH B:1220
BINDING SITE FOR RESIDUE GSH B 1200
3
AC3
SOFTWARE
CYS A:37 , TYR A:39 , GSH A:200 , CYS B:37 , SER B:38 , TYR B:39 , GSH B:1200
BINDING SITE FOR RESIDUE FES A 1001
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025234 (K55E, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025234
K
95
E
GLRX2_HUMAN
Polymorphism
34237236
A/B
K
55
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_2 (A:17-115,B:17-117)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_2
PS51354
Glutaredoxin domain profile.
GLRX2_HUMAN
57-157
2
A:17-115
B:17-117
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Exons
(3, 6)
Info
All Exons
Exon 1.3 (A:12-21 | B:14-21)
Exon 1.4 (A:22-80 | B:22-80)
Exon 1.5b (A:81-115 | B:81-124)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000367439
2
ENSE00001444503
chr1:
193074561-193074394
168
GLRX2_HUMAN
1-40
40
0
-
-
1.3
ENST00000367439
3
ENSE00000995909
chr1:
193070334-193070271
64
GLRX2_HUMAN
40-61
22
2
A:12-21
B:14-21
10
8
1.4
ENST00000367439
4
ENSE00000790967
chr1:
193066890-193066714
177
GLRX2_HUMAN
62-120
59
2
A:22-80
B:22-80
59
59
1.5b
ENST00000367439
5b
ENSE00001896933
chr1:
193065889-193065598
292
GLRX2_HUMAN
121-164
44
2
A:81-115
B:81-124
35
44
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ht9a_ (A:)
1b: SCOP_d2ht9b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d2ht9a_
A:
1b
d2ht9b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
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Chain X
Asymmetric Unit 1
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Asym.Unit (47 KB)
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