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2HT6
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GEM G-DOMAIN BOUND TO GDP
Authors
:
Y. Opatowsky, J. A. Hirsch
Date
:
25 Jul 06 (Deposition) - 31 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Small G-Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Opatowsky, Y. Sasson, I. Shaked, Y. Ward, O. Chomsky-Hecht, Y. Litvak, Z. Selinger, K. Kelly, J. A. Hirsch
Structure-Function Studies Of The G-Domain From Human Gem, A Novel Small G-Protein.
Febs Lett. V. 580 5959 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:89 , GDP A:545 , HOH A:808 , HOH A:834 , HOH A:874 , HOH A:884
BINDING SITE FOR RESIDUE MG A 344
2
AC2
SOFTWARE
SER B:89 , GDP B:645 , HOH B:821 , HOH B:822
BINDING SITE FOR RESIDUE MG B 444
3
AC3
SOFTWARE
GLY A:85 , VAL A:86 , GLY A:87 , LYS A:88 , SER A:89 , THR A:90 , ASN A:191 , LYS A:192 , ASP A:194 , LEU A:195 , SER A:221 , ALA A:222 , ALA A:223 , MG A:344 , HOH A:808 , HOH A:866 , HOH A:884
BINDING SITE FOR RESIDUE GDP A 545
4
AC4
SOFTWARE
GLY B:85 , VAL B:86 , GLY B:87 , LYS B:88 , SER B:89 , THR B:90 , ASN B:191 , LYS B:192 , ASP B:194 , LEU B:195 , SER B:221 , ALA B:222 , ALA B:223 , MG B:444 , HOH B:821 , HOH B:822
BINDING SITE FOR RESIDUE GDP B 645
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(4, 8)
Info
All Exons
Exon 1.3b (A:72-111 (gaps) | B:74-111 (gaps))
Exon 1.4 (A:111-136 | B:111-136)
Exon 1.5 (A:139-205 | B:138-205)
Exon 1.6b (A:205-243 | B:205-243)
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All Exon Boundaries
1: Boundary 1.1a/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000396194
1a
ENSE00002127584
chr8:
95274578-95274433
146
GEM_HUMAN
-
0
0
-
-
1.3b
ENST00000396194
3b
ENSE00001088912
chr8:
95272740-95272401
340
GEM_HUMAN
1-111
111
2
A:72-111 (gaps)
B:74-111 (gaps)
40
38
1.4
ENST00000396194
4
ENSE00001088910
chr8:
95265340-95265264
77
GEM_HUMAN
111-136
26
2
A:111-136
B:111-136
26
26
1.5
ENST00000396194
5
ENSE00001088914
chr8:
95264451-95264247
205
GEM_HUMAN
137-205
69
2
A:139-205
B:138-205
67
68
1.6b
ENST00000396194
6b
ENSE00002114213
chr8:
95262815-95261481
1335
GEM_HUMAN
205-296
92
2
A:205-243
B:205-243
39
39
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ht6a_ (A:)
1b: SCOP_d2ht6b_ (B:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
GTP-binding protein GEM
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2ht6a_
A:
1b
d2ht6b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ht6A00 (A:72-243)
1b: CATH_2ht6B00 (B:74-243)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2ht6A00
A:72-243
1b
2ht6B00
B:74-243
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (63 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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