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2HSE
Asym. Unit
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Asym.Unit (158 KB)
Biol.Unit 1 (452 KB)
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(1)
Title
:
STRUCTURE OF D236A E. COLI ASPARTATE TRANSCARBAMOYLASE IN THE PRESENCE OF PHOSPHONOACETAMIDE AND L-ASPARTATE AT 2.60 A RESOLUTION
Authors
:
J. Wang, E. R. Kantrowitz
Date
:
21 Jul 06 (Deposition) - 17 Jul 07 (Release) - 29 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
X-Ray Crystallography, Domain Closure, Allosteric Transition, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, J. Eldo, E. R. Kantrowitz
The Allosteric Transition Induced By The Aspartate Binding To Aspartate Transcarbamoylase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ASPARTIC ACID (ASPa)
1b: ASPARTIC ACID (ASPb)
1c: ASPARTIC ACID (ASPc)
2a: PHOSPHONOACETAMIDE (PCTa)
2b: PHOSPHONOACETAMIDE (PCTb)
3a: PHOSPHATE ION (PO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASP
3
Mod. Amino Acid
ASPARTIC ACID
2
PCT
2
Ligand/Ion
PHOSPHONOACETAMIDE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS B:109 , CYS B:114 , CYS B:138 , CYS B:141 , HOH B:155
BINDING SITE FOR RESIDUE ZN B 954
2
AC2
SOFTWARE
CYS D:109 , CYS D:114 , CYS D:138 , CYS D:141
BINDING SITE FOR RESIDUE ZN D 955
3
AC3
SOFTWARE
SER A:96 , THR A:97 , TYR A:98 , VAL A:99 , ASP A:100
BINDING SITE FOR RESIDUE PO4 A 914
4
AC4
SOFTWARE
SER A:52 , THR A:53 , ARG A:54 , THR A:55 , SER A:80 , LYS A:84 , ARG A:105 , HIS A:134 , PRO A:266 , LEU A:267 , ASP A:812 , ASP A:813
BINDING SITE FOR RESIDUE PCT A 811
5
AC5
SOFTWARE
LYS A:84 , ARG A:105 , ARG A:167 , ARG A:229 , GLN A:231 , LEU A:267 , PRO A:268 , HOH A:320 , HOH A:366 , PCT A:811
BINDING SITE FOR RESIDUE ASP A 812
6
AC6
SOFTWARE
ARG A:54 , THR A:55 , SER A:58 , TYR A:98 , HIS A:134 , GLN A:137 , LEU A:140 , PRO A:266 , ALA A:289 , GLY A:292 , ARG A:296 , PCT A:811
BINDING SITE FOR RESIDUE ASP A 813
7
AC7
SOFTWARE
ALA C:51 , SER C:52 , THR C:53 , ARG C:54 , THR C:55 , SER C:80 , LYS C:84 , ARG C:105 , HIS C:134 , GLN C:137 , PRO C:266 , LEU C:267 , PRO C:268 , ASP C:912
BINDING SITE FOR RESIDUE PCT C 911
8
AC8
SOFTWARE
LYS C:84 , ARG C:105 , ARG C:167 , ARG C:229 , GLN C:231 , LEU C:267 , PRO C:268 , HOH C:349 , HOH C:356 , PCT C:911
BINDING SITE FOR RESIDUE ASP C 912
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:48-55,C:48-55)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_ECOLI
49-56
2
A:48-55
C:48-55
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d2hseb1 (B:8-100)
1b: SCOP_d2hsed1 (D:8-100)
2a: SCOP_d2hsea1 (A:1-150)
2b: SCOP_d2hsea2 (A:151-310)
2c: SCOP_d2hsec1 (C:1-150)
2d: SCOP_d2hsec2 (C:151-310)
3a: SCOP_d2hseb2 (B:101-153)
3b: SCOP_d2hsed2 (D:101-153)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase
(62)
Escherichia coli [TaxId: 562]
(59)
1a
d2hseb1
B:8-100
1b
d2hsed1
D:8-100
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Escherichia coli [TaxId: 562]
(62)
2a
d2hsea1
A:1-150
2b
d2hsea2
A:151-310
2c
d2hsec1
C:1-150
2d
d2hsec2
C:151-310
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Escherichia coli [TaxId: 562]
(59)
3a
d2hseb2
B:101-153
3b
d2hsed2
D:101-153
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_2hseB01 (B:8-100)
1b: CATH_2hseD01 (D:10-100)
2a: CATH_2hseA02 (A:134-291)
2b: CATH_2hseC02 (C:134-291)
2c: CATH_2hseA01 (A:1-133,A:292-310)
2d: CATH_2hseC01 (C:1-133,C:292-310)
3a: CATH_2hseB02 (B:101-153)
3b: CATH_2hseD02 (D:101-153)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.140, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
1a
2hseB01
B:8-100
1b
2hseD01
D:10-100
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Escherichia coli. Organism_taxid: 562.
(22)
2a
2hseA02
A:134-291
2b
2hseC02
C:134-291
2c
2hseA01
A:1-133,A:292-310
2d
2hseC01
C:1-133,C:292-310
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.20, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
3a
2hseB02
B:101-153
3b
2hseD02
D:101-153
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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