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2HRG
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BLUE LACCASE FROM TRAMETES TROGII COMPLEXED WITH P-METHYLBENZOATE
Authors
:
I. Matera, A. Gullotto, M. Ferraroni, S. Tilli, F. Briganti, A. Scozzaf
Date
:
20 Jul 06 (Deposition) - 11 Sep 07 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Laccase, Oxidoreductase, Lignin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Matera, A. Gullotto, S. Tilli, M. Ferraroni, A. Scozzafava, F. Briganti
Crystal Structure Of The Blue Multicopper Oxidase From The White-Rot Fungus Trametes Trogii Complexed With P-Toluate
Inorg. Chim. Acta. V. 361 4129 2008
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: 4-METHYLBENZOIC ACID (4MAa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
4a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
4b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
5a: COPPER (II) ION (CUa)
5b: COPPER (II) ION (CUb)
5c: COPPER (II) ION (CUc)
5d: COPPER (II) ION (CUd)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
7a: ALPHA-D-MANNOSE (MANa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MA
1
Ligand/Ion
4-METHYLBENZOIC ACID
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
3
Ligand/Ion
CALCIUM ION
4
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
5
CU
4
Ligand/Ion
COPPER (II) ION
6
GOL
3
Ligand/Ion
GLYCEROL
7
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:22 , GLN A:23 , ASN A:54 , MET A:57 , HIS A:153 , LEU A:154 , ALA A:155 , VAL A:158 , ASN A:248 , BMA A:498 , HOH A:3100 , HOH A:3319 , HOH A:3497 , HOH A:3538 , HOH A:3539 , HOH A:3540 , HOH A:3542 , HOH A:3546
BINDING SITE FOR RESIDUE CBS A 497
02
AC2
SOFTWARE
CBS A:497 , MAN A:499 , HOH A:3319 , HOH A:3545
BINDING SITE FOR RESIDUE BMA A 498
03
AC3
SOFTWARE
BMA A:498 , HOH A:3543 , HOH A:3548
BINDING SITE FOR RESIDUE MAN A 499
04
AC4
SOFTWARE
ALA A:324 , ASN A:326 , SER A:382 , ASN A:433 , HOH A:3108 , HOH A:3266 , HOH A:3321 , HOH A:3333 , HOH A:3339 , HOH A:3439 , HOH A:3460 , HOH A:3463 , HOH A:3506 , HOH A:3526 , HOH A:3527
BINDING SITE FOR RESIDUE CBS A 1006
05
AC5
SOFTWARE
HIS A:394 , CYS A:450 , ILE A:452 , HIS A:455
BINDING SITE FOR RESIDUE CU A 1497
06
AC6
SOFTWARE
HIS A:64 , HIS A:66 , TRP A:107 , HIS A:109 , HIS A:451 , HOH A:3160
BINDING SITE FOR RESIDUE CU A 1498
07
AC7
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:397 , HIS A:399 , HOH A:3036
BINDING SITE FOR RESIDUE CU A 1499
08
AC8
SOFTWARE
HIS A:111 , HIS A:399 , HIS A:449 , HOH A:3160
BINDING SITE FOR RESIDUE CU A 1500
09
AC9
SOFTWARE
SER A:143 , THR A:188 , HOH A:3340 , HOH A:3396 , HOH A:3533
BINDING SITE FOR RESIDUE CA A 1001
10
BC1
SOFTWARE
ALA A:103 , SER A:224 , HOH A:3075 , HOH A:3122 , HOH A:3170 , HOH A:3259
BINDING SITE FOR RESIDUE CA A 1002
11
BC2
SOFTWARE
ASP A:183 , GLY A:309 , HOH A:3425 , HOH A:3429 , HOH A:3431 , HOH A:3496
BINDING SITE FOR RESIDUE CA A 1003
12
BC3
SOFTWARE
VAL A:162 , PHE A:331 , PRO A:390 , GLY A:391 , HIS A:455 , ALA A:473 , HOH A:3225 , HOH A:3298
BINDING SITE FOR RESIDUE 4MA A 3001
13
BC4
SOFTWARE
VAL A:15 , SER A:16 , PRO A:17 , PHE A:31 , LEU A:173 , LYS A:228 , HOH A:3128 , HOH A:3216 , HOH A:3273
BINDING SITE FOR RESIDUE GOL A 2001
14
BC5
SOFTWARE
ALA A:80 , HIS A:111 , SER A:113 , PHE A:447 , LEU A:456 , HOH A:3027 , HOH A:3256 , HOH A:3387 , HOH A:3415
BINDING SITE FOR RESIDUE GOL A 2002
15
BC6
SOFTWARE
ALA A:14 , LEU A:26 , ASP A:29 , LYS A:228 , PRO A:229 , THR A:231
BINDING SITE FOR RESIDUE GOL A 2003
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2hrga1 (A:1-130)
1b: SCOP_d2hrga2 (A:131-299)
1c: SCOP_d2hrga3 (A:300-496)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Funalia trogii [TaxId: 76130]
(2)
1a
d2hrga1
A:1-130
1b
d2hrga2
A:131-299
1c
d2hrga3
A:300-496
[
close SCOP info
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hrgA01 (A:1-132)
1b: CATH_2hrgA02 (A:133-308)
1c: CATH_2hrgA03 (A:309-496)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Funalia trogii. Organism_taxid: 76130. Strain: 201 (dsm11919)
(2)
1a
2hrgA01
A:1-132
1b
2hrgA02
A:133-308
1c
2hrgA03
A:309-496
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (97 KB)
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