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Getting 'Exon' information from database.
2HRB
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CARBONYL REDUCTASE 3, COMPLEXED WITH NADP+
Authors
:
E. S. Pilka, Structural Genomics Consortium (Sgc)
Date
:
20 Jul 06 (Deposition) - 08 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Retinol, Dehydrogenase, Peroxisome, Structural Genomics, Short-Chain Dehydrogenase/Reductase, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Pilka, A. Rojkova, K. L. Kavanagh, F. Niesen, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:12 , ASN A:14 , ARG A:15 , GLY A:16 , ILE A:17 , ARG A:38 , ARG A:42 , LEU A:62 , ASP A:63 , ILE A:64 , ASP A:65 , ASN A:90 , ALA A:91 , ALA A:92 , ILE A:138 , SER A:139 , TYR A:194 , LYS A:198 , PRO A:228 , GLY A:229 , VAL A:231 , ASP A:239 , GOL A:2001 , HOH A:2006 , HOH A:2012 , HOH A:2017 , HOH A:2036 , HOH A:2060 , HOH A:2076 , HOH A:2139 , HOH A:2169
BINDING SITE FOR RESIDUE NAP A 1001
2
AC2
SOFTWARE
ALA A:92 , VAL A:93 , ALA A:94 , TYR A:194 , NAP A:1001 , HOH A:2169
BINDING SITE FOR RESIDUE GOL A 2001
3
AC3
SOFTWARE
HIS A:159 , ARG A:206 , ASN A:276 , TRP A:277 , HOH A:2130 , HOH A:2135 , HOH A:2219
BINDING SITE FOR RESIDUE GOL A 2002
4
AC4
SOFTWARE
ARG A:38 , ASP A:39 , VAL A:40 , ALA A:41 , ARG A:78 , GLY A:82 , PRO A:127 , ILE A:128 , HOH A:2030 , HOH A:2108
BINDING SITE FOR RESIDUE GOL A 2003
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033869 (L84V, chain A, )
2: VAR_033870 (V93I, chain A, )
3: VAR_033871 (P131S, chain A, )
4: VAR_033872 (M235L, chain A, )
5: VAR_033873 (V244M, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033869
L
84
V
CBR3_HUMAN
Polymorphism
9282628
A
L
84
V
2
UniProt
VAR_033870
V
93
I
CBR3_HUMAN
Polymorphism
2835285
A
V
93
I
3
UniProt
VAR_033871
P
131
S
CBR3_HUMAN
Polymorphism
16993929
A
P
131
S
4
UniProt
VAR_033872
M
235
L
CBR3_HUMAN
Polymorphism
4987121
A
M
235
L
5
UniProt
VAR_033873
V
244
M
CBR3_HUMAN
Polymorphism
1056892
A
V
244
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:181-209)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
CBR3_HUMAN
181-209
1
A:181-209
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:5-97)
Exon 1.2 (A:97-133)
Exon 1.3 (A:133-277)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000290354
1
ENSE00001044175
chr21:
37507210-37507779
570
CBR3_HUMAN
1-97
97
1
A:5-97
93
1.2
ENST00000290354
2
ENSE00001044173
chr21:
37510123-37510230
108
CBR3_HUMAN
97-133
37
1
A:97-133
37
1.3
ENST00000290354
3
ENSE00001044176
chr21:
37518374-37518864
491
CBR3_HUMAN
133-277
145
1
A:133-277
145
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hrba_ (A:)
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(
)
(
)
Folds
(
)
(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2hrba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2hrbA00 (A:5-277)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2hrbA00
A:5-277
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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