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2HR1
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
TERNARY STRUCTURE OF WT M.HHAI C5-CYTOSINE DNA METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY
Authors
:
F. Shieh
Date
:
19 Jul 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,C,D
Biol. Unit 1: A,C,D (1x)
Keywords
:
High Resolution, M. Hhai, Transferase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. K. Shieh, B. Youngblood, N. O. Reich
The Role Of Arg165 Towards Base Flipping, Base Stabilization And Catalysis In M. Hhai.
J. Mol. Biol. V. 362 516 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
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No.
Name
Count
Type
Full Name
1
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:18 , ALA A:19 , GLY A:20 , LEU A:21 , GLY A:23 , ASN A:39 , GLU A:40 , TRP A:41 , ASP A:42 , ASP A:60 , ILE A:61 , GLY A:78 , PRO A:80 , TYR A:285 , ASN A:304 , SER A:305 , VAL A:306 , HOH A:330 , HOH A:331 , HOH A:343 , HOH A:354 , HOH A:356
BINDING SITE FOR RESIDUE SAH A 328
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 3)
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1: SAM_MT_C5 (A:12-325)
2: C5_MTASE_1 (A:73-85)
3: C5_MTASE_2 (A:300-318)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_MT_C5
PS51679
C-5 cytosine-specific DNA methylase (Dnmt) domain profile.
MTH1_HAEPH
12-325
1
A:12-325
2
C5_MTASE_1
PS00094
C-5 cytosine-specific DNA methylases active site.
MTH1_HAEPH
73-85
1
A:73-85
3
C5_MTASE_2
PS00095
C-5 cytosine-specific DNA methylases C-terminal signature.
MTH1_HAEPH
300-318
1
A:300-318
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
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1a: SCOP_d2hr1a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
C5 cytosine-specific DNA methylase, DCM
(32)
Protein domain
:
DNA methylase HhaI
(22)
Haemophilus parahaemolyticus [TaxId: 735]
(6)
1a
d2hr1a_
A:
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CATH Domains
(2, 2)
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all CATH domains
1a: CATH_2hr1A01 (A:1-186,A:285-327)
2a: CATH_2hr1A02 (A:187-284)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
[unclassified]
(23)
1a
2hr1A01
A:1-186,A:285-327
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
DNA Methylase; Chain A, domain 2
(31)
Homologous Superfamily
:
DNA Methylase, subunit A, domain 2
(31)
[unclassified]
(15)
2a
2hr1A02
A:187-284
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Pfam Domains
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