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2HQU
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
HUMAN DUTPASE IN COMPLEX WITH ALPHA,BETA-IMINODUTP AND MAGNESIUM ION
Authors
:
O. Barabas, B. Varga, B. G. Vertessy
Date
:
19 Jul 06 (Deposition) - 24 Jul 07 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Jelly-Roll, Protein-Substrate Analogue Ligand Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Varga, O. Barabas, J. Kovari, J. Toth, E. Hunyadi-Gulyas, E. Klement, K. F. Medzihradszky, F. Tolgyesi, J. Fidy, B. G. Vertessy
Active Site Closure Facilitates Juxtaposition Of Reactant Atoms For Initiation Of Catalysis By Human Dutpase.
Febs Lett. V. 581 4783 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMID... (DUPa)
2b: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMID... (DUPb)
2c: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMID... (DUPc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DUP
3
Ligand/Ion
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
3
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
DUP A:777 , HOH A:1012 , HOH A:1042
BINDING SITE FOR RESIDUE MG A 997
2
AC2
SOFTWARE
DUP B:777 , HOH C:1021 , HOH C:1022
BINDING SITE FOR RESIDUE MG C 998
3
AC3
SOFTWARE
HOH B:1019 , HOH B:1030 , DUP C:777 , HOH C:1029
BINDING SITE FOR RESIDUE MG B 999
4
AC4
SOFTWARE
ASP A:95 , HOH A:1009 , ASP C:95 , HOH C:1031
BINDING SITE FOR RESIDUE MG A 998
5
AC5
SOFTWARE
ILE C:72 , LEU C:74 , ASP C:102 , GLU C:103 , TYR C:105 , ARG C:106
BINDING SITE FOR RESIDUE CL C 999
6
AC6
SOFTWARE
ARG A:85 , SER A:86 , GLY A:87 , GLN A:131 , MG A:997 , HOH A:1005 , HOH A:1012 , HOH A:1014 , HOH A:1042 , HOH A:1046 , ALA B:98 , GLY B:99 , VAL B:100 , ILE B:101 , ASP B:102 , TYR B:105 , GLY B:110 , HOH B:1001 , HOH B:1011 , PHE C:158
BINDING SITE FOR RESIDUE DUP A 777
7
AC7
SOFTWARE
ALA A:98 , GLY A:99 , VAL A:100 , ILE A:101 , ASP A:102 , TYR A:105 , GLY A:110 , HOH A:999 , ARG B:153 , GLY B:157 , PHE B:158 , GLY B:159 , SER B:160 , THR B:161 , HOH B:1000 , HOH B:1008 , HOH B:1029 , ARG C:85 , SER C:86 , GLY C:87 , GLN C:131 , MG C:998 , HOH C:1022
BINDING SITE FOR RESIDUE DUP B 777
8
AC8
SOFTWARE
ARG A:153 , GLY A:157 , PHE A:158 , GLY A:159 , SER A:160 , THR A:161 , ARG B:85 , SER B:86 , GLY B:87 , GLN B:131 , MG B:999 , HOH B:1019 , HOH B:1030 , ALA C:98 , GLY C:99 , VAL C:100 , ILE C:101 , ASP C:102 , TYR C:105 , GLY C:110 , HOH C:1000 , HOH C:1001 , HOH C:1002 , HOH C:1003 , HOH C:1029
BINDING SITE FOR RESIDUE DUP C 777
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(6, 17)
Info
All Exons
Exon 1.2b (A:24-52 (gaps) | B:24-52 | C:24-52)
Exon 1.3 (A:52-83 | B:52-83 | C:52-83)
Exon 1.4 (A:83-98 | B:83-98 | C:83-98)
Exon 1.5 (A:98-123 | B:98-123 | C:98-123)
Exon 1.6 (A:123-146 | B:123-146 | C:123-146)
Exon 1.7b (A:147-164 | B:147-164 | -)
View:
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All Exon Boundaries
1: Boundary 1.1b/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000331200
1b
ENSE00001487133
chr15:
48623621-48623992
372
DUT_HUMAN
1-94
94
0
-
-
1.2b
ENST00000331200
2b
ENSE00001789447
chr15:
48624465-48624603
139
DUT_HUMAN
94-140
47
3
A:24-52 (gaps)
B:24-52
C:24-52
29
29
29
1.3
ENST00000331200
3
ENSE00000686853
chr15:
48626614-48626705
92
DUT_HUMAN
140-171
32
3
A:52-83
B:52-83
C:52-83
32
32
32
1.4
ENST00000331200
4
ENSE00000686856
chr15:
48628243-48628287
45
DUT_HUMAN
171-186
16
3
A:83-98
B:83-98
C:83-98
16
16
16
1.5
ENST00000331200
5
ENSE00000686860
chr15:
48633486-48633560
75
DUT_HUMAN
186-211
26
3
A:98-123
B:98-123
C:98-123
26
26
26
1.6
ENST00000331200
6
ENSE00000884477
chr15:
48633712-48633782
71
DUT_HUMAN
211-234
24
3
A:123-146
B:123-146
C:123-146
24
24
24
1.7b
ENST00000331200
7b
ENSE00001030201
chr15:
48634219-48635570
1352
DUT_HUMAN
235-252
18
2
A:147-164
B:147-164
-
18
18
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2hqua_ (A:)
1b: SCOP_d2hqub_ (B:)
1c: SCOP_d2hquc_ (C:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
dUTPase-like
(122)
Family
:
automated matches
(51)
Protein domain
:
automated matches
(51)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2hqua_
A:
1b
d2hqub_
B:
1c
d2hquc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2hquB00 (B:24-164)
1b: CATH_2hquA00 (A:24-164)
1c: CATH_2hquC00 (C:24-158)
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(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A
(52)
Homologous Superfamily
:
[code=2.70.40.10, no name defined]
(51)
Human (Homo sapiens)
(4)
1a
2hquB00
B:24-164
1b
2hquA00
A:24-164
1c
2hquC00
C:24-158
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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