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2HQT
Asym. Unit
Info
Asym.Unit (408 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 10 (25 KB)
Biol.Unit 11 (24 KB)
Biol.Unit 12 (24 KB)
Biol.Unit 13 (25 KB)
Biol.Unit 14 (24 KB)
Biol.Unit 15 (25 KB)
Biol.Unit 16 (25 KB)
Biol.Unit 17 (25 KB)
Biol.Unit 18 (25 KB)
Biol.Unit 19 (24 KB)
Biol.Unit 2 (25 KB)
Biol.Unit 20 (25 KB)
Biol.Unit 3 (23 KB)
Biol.Unit 4 (25 KB)
Biol.Unit 5 (24 KB)
Biol.Unit 6 (24 KB)
Biol.Unit 7 (25 KB)
Biol.Unit 8 (23 KB)
Biol.Unit 9 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE INTERACTING DOMAINS FROM YEAST GLUTAMYL-TRNA SYNTHETASE AND TRNA AMINOACYLATION AND NUCLEAR EXPORT COFACTOR ARC1P REVEAL A NOVEL FUNCTION FOR AN OLD FOLD
Authors
:
H. Simader, M. Hothorn, D. Suck
Date
:
19 Jul 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Biol. Unit 17: Q (1x)
Biol. Unit 18: R (1x)
Biol. Unit 19: S (1x)
Biol. Unit 20: T (1x)
Keywords
:
Gst-Fold, Biosynthetic Protein, Rna Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Simader, M. Hothorn, D. Suck
Structures Of The Interacting Domains From Yeast Glutamyl-Trna Synthetase And Trna-Aminoacylation And Nuclear-Export Cofactor Arc1P Reveal A Novel Function For A Old Fold.
Acta Crystallogr. , Sect. D V. 62 1510 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
10
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:54 , THR B:95 , ARG B:98 , HOH B:2096 , LYS C:91 , ARG C:98 , ARG D:54
BINDING SITE FOR RESIDUE SO4 B 2001
02
AC2
SOFTWARE
LYS A:91 , ARG A:98 , ARG B:54 , ARG C:54 , ARG D:98
BINDING SITE FOR RESIDUE SO4 A 2002
03
AC3
SOFTWARE
ARG E:54 , HOH E:2051 , LYS F:91 , THR F:95 , ARG F:98 , ARG G:98 , ARG H:54
BINDING SITE FOR RESIDUE SO4 E 2003
04
AC4
SOFTWARE
LYS E:91 , ARG E:98 , HOH E:2061 , ARG F:54 , ARG G:54 , ARG H:98
BINDING SITE FOR RESIDUE SO4 E 2004
05
AC5
SOFTWARE
LYS I:91 , ARG I:98 , ARG J:54 , ARG K:54 , ARG L:98
BINDING SITE FOR RESIDUE SO4 I 2005
06
AC6
SOFTWARE
ARG I:54 , LYS J:91 , ARG J:98 , ARG K:98 , HOH K:134 , ARG L:54
BINDING SITE FOR RESIDUE SO4 J 2006
07
AC7
SOFTWARE
ARG M:54 , LYS N:91 , THR N:95 , ARG N:98 , HOH N:2043 , ARG O:98 , ARG P:54
BINDING SITE FOR RESIDUE SO4 N 2007
08
AC8
SOFTWARE
ARG M:98 , ARG N:54 , ARG O:54 , ARG P:98
BINDING SITE FOR RESIDUE SO4 M 2008
09
AC9
SOFTWARE
LYS Q:91 , ARG Q:98 , HOH Q:2071 , ARG R:54 , ARG S:54 , LYS T:91 , THR T:95 , ARG T:98
BINDING SITE FOR RESIDUE SO4 Q 2009
10
BC1
SOFTWARE
ARG Q:54 , LYS R:91 , ARG R:98 , LYS S:91 , ARG S:98 , ARG T:54
BINDING SITE FOR RESIDUE SO4 S 2010
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(1, 20)
Info
All Exons
Exon 1.1 (A:4-121 (gaps) | B:3-122 | C:5-121...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL105W
1
YGL105W.1
VII:307440-308570
1131
ARC1_YEAST
1-376
376
20
A:4-121 (gaps)
B:3-122
C:5-121 (gaps)
D:3-122
E:4-122 (gaps)
F:3-121
G:3-122
H:4-122 (gaps)
I:3-121 (gaps)
J:3-122
K:4-121 (gaps)
L:4-122
M:3-121 (gaps)
N:3-121
O:4-122
P:3-121
Q:3-121 (gaps)
R:4-122
S:5-121 (gaps)
T:3-123
118
120
117
120
119
119
120
119
119
120
118
119
119
119
119
119
119
119
117
121
[
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]
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d2hqta1 (A:4-121)
1b: SCOP_d2hqtb_ (B:)
1c: SCOP_d2hqtk_ (K:)
1d: SCOP_d2hqtl_ (L:)
1e: SCOP_d2hqtm_ (M:)
1f: SCOP_d2hqtn_ (N:)
1g: SCOP_d2hqto_ (O:)
1h: SCOP_d2hqtp_ (P:)
1i: SCOP_d2hqtq_ (Q:)
1j: SCOP_d2hqtr_ (R:)
1k: SCOP_d2hqts_ (S:)
1l: SCOP_d2hqtt_ (T:)
1m: SCOP_d2hqtc_ (C:)
1n: SCOP_d2hqtd_ (D:)
1o: SCOP_d2hqte_ (E:)
1p: SCOP_d2hqtf_ (F:)
1q: SCOP_d2hqtg_ (G:)
1r: SCOP_d2hqth_ (H:)
1s: SCOP_d2hqti_ (I:)
1t: SCOP_d2hqtj_ (J:)
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(
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)
Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Arc1p N-terminal domain-like
(4)
Protein domain
:
GU4 nucleic-binding protein 1, Arc1p
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d2hqta1
A:4-121
1b
d2hqtb_
B:
1c
d2hqtk_
K:
1d
d2hqtl_
L:
1e
d2hqtm_
M:
1f
d2hqtn_
N:
1g
d2hqto_
O:
1h
d2hqtp_
P:
1i
d2hqtq_
Q:
1j
d2hqtr_
R:
1k
d2hqts_
S:
1l
d2hqtt_
T:
1m
d2hqtc_
C:
1n
d2hqtd_
D:
1o
d2hqte_
E:
1p
d2hqtf_
F:
1q
d2hqtg_
G:
1r
d2hqth_
H:
1s
d2hqti_
I:
1t
d2hqtj_
J:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (408 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Biol.Unit 10 (25 KB)
Header - Biol.Unit 10
Biol.Unit 11 (24 KB)
Header - Biol.Unit 11
Biol.Unit 12 (24 KB)
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Biol.Unit 13 (25 KB)
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Biol.Unit 14 (24 KB)
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Biol.Unit 15 (25 KB)
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Biol.Unit 16 (25 KB)
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Biol.Unit 17 (25 KB)
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Biol.Unit 18 (25 KB)
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Biol.Unit 19 (24 KB)
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Biol.Unit 2 (25 KB)
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Biol.Unit 20 (25 KB)
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Biol.Unit 3 (23 KB)
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Biol.Unit 4 (25 KB)
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Biol.Unit 5 (24 KB)
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Biol.Unit 8 (23 KB)
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Biol.Unit 9 (24 KB)
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