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2HQE
Asym. Unit
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Asym.Unit (58 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN P100 TUDOR DOMAIN: LARGE FRAGMENT
Authors
:
N. Shah, M. Zhao, C. Cheng, H. Xu, J. Yang, O. Silvennoinen, Z. J. Liu, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date
:
18 Jul 06 (Deposition) - 03 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
P100 Tudor Domain, Large Fragment, Human, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Shah, M. Zhao, C. Cheng, H. Xu, J. Yang, O. Silvennoinen, B. C. Wang, Z. J. Liu
Crystal Structure Of A Large Fragment Of The Human P100 Tudor Domain
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TUDOR (A:704-762,B:704-762)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUDOR
PS50304
Tudor domain profile.
SND1_HUMAN
729-787
2
A:704-762
B:704-762
[
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Exons
(7, 10)
Info
All Exons
Exon 1.29b (A:654-679 | -)
Exon 1.30b (A:679-720 | B:680-720 (gaps))
Exon 1.31 (A:720-743 | B:720-743)
Exon 1.32b (A:744-781 | B:744-770)
Exon 1.33a (A:782-849 | -)
Exon 1.34 (A:850-864 | -)
Exon 1.35c (A:865-870 | -)
View:
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All Exon Boundaries
1: Boundary 1.28b/1.29b
2: Boundary 1.29b/1.30b
3: Boundary 1.30b/1.31
4: Boundary 1.31/1.32b
5: Boundary 1.32b/1.33a
6: Boundary 1.33a/1.34
7: Boundary 1.34/1.35c
8: Boundary 1.35c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000354725
1b
ENSE00001903029
chr7:
127292234-127292505
272
SND1_HUMAN
1-26
26
0
-
-
1.4a
ENST00000354725
4a
ENSE00000882264
chr7:
127326667-127326816
150
SND1_HUMAN
27-76
50
0
-
-
1.7b
ENST00000354725
7b
ENSE00000720774
chr7:
127334882-127335002
121
SND1_HUMAN
77-117
41
0
-
-
1.8b
ENST00000354725
8b
ENSE00000720777
chr7:
127338929-127339007
79
SND1_HUMAN
117-143
27
0
-
-
1.9b
ENST00000354725
9b
ENSE00000720780
chr7:
127341217-127341377
161
SND1_HUMAN
143-197
55
0
-
-
1.10
ENST00000354725
10
ENSE00000720784
chr7:
127342489-127342580
92
SND1_HUMAN
197-227
31
0
-
-
1.11c
ENST00000354725
11c
ENSE00000720787
chr7:
127343219-127343377
159
SND1_HUMAN
228-280
53
0
-
-
1.12
ENST00000354725
12
ENSE00000720791
chr7:
127344893-127344999
107
SND1_HUMAN
281-316
36
0
-
-
1.13
ENST00000354725
13
ENSE00000720793
chr7:
127347611-127347701
91
SND1_HUMAN
316-346
31
0
-
-
1.15
ENST00000354725
15
ENSE00000720795
chr7:
127361341-127361454
114
SND1_HUMAN
347-384
38
0
-
-
1.16
ENST00000354725
16
ENSE00000977906
chr7:
127447538-127447627
90
SND1_HUMAN
385-414
30
0
-
-
1.17
ENST00000354725
17
ENSE00000977907
chr7:
127484377-127484477
101
SND1_HUMAN
415-448
34
0
-
-
1.18b
ENST00000354725
18b
ENSE00000977908
chr7:
127527955-127528065
111
SND1_HUMAN
448-485
38
0
-
-
1.20b
ENST00000354725
20b
ENSE00001089728
chr7:
127544800-127544872
73
SND1_HUMAN
485-509
25
0
-
-
1.22b
ENST00000354725
22b
ENSE00000977910
chr7:
127569241-127569382
142
SND1_HUMAN
510-557
48
0
-
-
1.24c
ENST00000354725
24c
ENSE00000977911
chr7:
127631000-127631109
110
SND1_HUMAN
557-593
37
0
-
-
1.28b
ENST00000354725
28b
ENSE00000977912
chr7:
127714554-127714742
189
SND1_HUMAN
594-656
63
0
-
-
1.29b
ENST00000354725
29b
ENSE00001208784
chr7:
127721412-127721553
142
SND1_HUMAN
657-704
48
1
A:654-679
-
26
-
1.30b
ENST00000354725
30b
ENSE00000977914
chr7:
127724776-127724899
124
SND1_HUMAN
704-745
42
2
A:679-720
B:680-720 (gaps)
42
41
1.31
ENST00000354725
31
ENSE00000977915
chr7:
127725763-127725832
70
SND1_HUMAN
745-768
24
2
A:720-743
B:720-743
24
24
1.32b
ENST00000354725
32b
ENSE00000977916
chr7:
127726990-127727103
114
SND1_HUMAN
769-806
38
2
A:744-781
B:744-770
38
27
1.33a
ENST00000354725
33a
ENSE00000977917
chr7:
127729541-127729744
204
SND1_HUMAN
807-874
68
1
A:782-849
-
68
-
1.34
ENST00000354725
34
ENSE00000977918
chr7:
127731889-127731933
45
SND1_HUMAN
875-889
15
1
A:850-864
-
15
-
1.35c
ENST00000354725
35c
ENSE00001925952
chr7:
127732045-127732659
615
SND1_HUMAN
890-910
21
1
A:865-870
-
6
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hqeb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
Tudor domain
(24)
Protein domain
:
P100 co-activator, SND1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2hqeb_
B:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2hqeA01 (A:654-675,A:769-870)
2a: CATH_2hqeB01 (B:680-760)
2b: CATH_2hqeA02 (A:676-768)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.90, no name defined]
(101)
Human (Homo sapiens)
(2)
1a
2hqeA01
A:654-675,A:769-870
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.140, no name defined]
(12)
Human (Homo sapiens)
(10)
2a
2hqeB01
B:680-760
2b
2hqeA02
A:676-768
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Pfam Domains
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