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2HPP
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
STRUCTURES OF THE NONCOVALENT COMPLEXES OF HUMAN AND BOVINE PROTHROMBIN FRAGMENT 2 WITH HUMAN PPACK-THROMBIN
Authors
:
A. Tulinsky, K. Padmanabhan
Date
:
28 Apr 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : H,L,P
Biol. Unit 1: H,L,P (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Serine Proteinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. K. Arni, K. Padmanabhan, K. P. Padmanabhan, T. P. Wu, A. Tulinsky
Structures Of The Noncovalent Complexes Of Human And Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin.
Biochemistry V. 32 4727 1993
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: D-PHENYLALANYL-N-[(3S)-6-CARBAMIMI... (0G7a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0G7
1
Ligand/Ion
D-PHENYLALANYL-N-[(3S)-6-CARBAMIMIDAMIDO-1-CHLORO-2-OXOHEXAN-3-YL]-L-PROLINAMIDE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS H:57 , TYR H:60A , GLU H:97A , LEU H:99 , ILE H:174 , ASP H:189 , ALA H:190 , CYS H:191 , GLY H:193 , SER H:195 , SER H:214 , TRP H:215 , GLY H:216 , GLY H:219
BINDING SITE FOR RESIDUE 0G7 H 1
[
close Site info
]
SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006714 (M32T, chain H, )
2: VAR_011782 (P37T, chain H, )
3: VAR_006715 (R67C, chain H, )
4: VAR_006716 (R73H, chain H, )
5: VAR_006717 (R101W, chain H, )
6: VAR_006718 (E146A, chain H, )
7: VAR_068913 (E164Q, chain H, )
8: VAR_006719 (G226V, chain H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006714
M
380
T
THRB_HUMAN
Disease (FA2D)
---
H
M
32
T
2
UniProt
VAR_011782
P
386
T
THRB_HUMAN
Polymorphism
5897
H
P
37
T
3
UniProt
VAR_006715
R
425
C
THRB_HUMAN
Disease (FA2D)
---
H
R
67
C
4
UniProt
VAR_006716
R
431
H
THRB_HUMAN
Disease (FA2D)
---
H
R
73
H
5
UniProt
VAR_006717
R
461
W
THRB_HUMAN
Disease (FA2D)
---
H
R
101
W
6
UniProt
VAR_006718
E
509
A
THRB_HUMAN
Disease (FA2D)
---
H
E
146
A
7
UniProt
VAR_068913
E
532
Q
THRB_HUMAN
Polymorphism
---
H
E
164
Q
8
UniProt
VAR_006719
G
601
V
THRB_HUMAN
Disease (FA2D)
---
H
G
226
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_1 (-|P:349-362)
2: TRYPSIN_DOM (H:16-243)
3: TRYPSIN_HIS (H:53-58)
4: TRYPSIN_SER (H:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_1
PS00021
Kringle domain signature.
THRB_BOVIN
157-170
262-275
1
-
P:349-362
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_HUMAN
364-618
1
H:16-243
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_HUMAN
402-407
1
H:53-58
4
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_HUMAN
562-573
1
H:189-200
[
close PROSITE info
]
Exons
(8, 9)
Info
All Exons
Exon 1.7 (P:301-379)
Exon 2.8 (- | L:1D-1A)
Exon 2.9 (H:16-29 | L:1A-14L)
Exon 2.10 (H:29-75 | -)
Exon 2.11b (H:75-129B | -)
Exon 2.12 (H:129B-184 (gaps) | -)
Exon 2.13 (H:184-202 | -)
Exon 2.14c (H:203-245 (gaps) | -)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.6/1.7
02: Boundary 1.7/1.8
03: Boundary 2.7b/2.8
04: Boundary 2.8/2.9
05: Boundary 2.9/2.10
06: Boundary 2.10/2.11b
07: Boundary 2.11b/2.12
08: Boundary 2.12/2.13
09: Boundary 2.13/2.14c
10: Boundary 2.14c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000009406
1
ENSBTAE00000076598
chr15:
77004894-77005007
114
THRB_BOVIN
1-27
27
0
-
-
1.2
ENSBTAT00000009406
2
ENSBTAE00000076606
chr15:
77005352-77005515
164
THRB_BOVIN
27-81
55
0
-
-
1.3
ENSBTAT00000009406
3
ENSBTAE00000306249
chr15:
77006130-77006154
25
THRB_BOVIN
82-90
9
0
-
-
1.4
ENSBTAT00000009406
4
ENSBTAE00000076608
chr15:
77006384-77006434
51
THRB_BOVIN
90-107
18
0
-
-
1.5
ENSBTAT00000009406
5
ENSBTAE00000076609
chr15:
77007812-77007917
106
THRB_BOVIN
107-142
36
0
-
-
1.6
ENSBTAT00000009406
6
ENSBTAE00000076610
chr15:
77008015-77008151
137
THRB_BOVIN
142-188
47
0
-
-
1.7
ENSBTAT00000009406
7
ENSBTAE00000076611
chr15:
77009362-77009676
315
THRB_BOVIN
188-293
106
1
P:301-379
79
1.8
ENSBTAT00000009406
8
ENSBTAE00000076614
chr15:
77009972-77010106
135
THRB_BOVIN
293-338
46
0
-
-
1.9
ENSBTAT00000009406
9
ENSBTAE00000076615
chr15:
77010182-77010308
127
THRB_BOVIN
338-380
43
0
-
-
1.10
ENSBTAT00000009406
10
ENSBTAE00000076616
chr15:
77011290-77011457
168
THRB_BOVIN
380-436
57
0
-
-
1.11
ENSBTAT00000009406
11
ENSBTAE00000076617
chr15:
77011956-77012129
174
THRB_BOVIN
436-494
59
0
-
-
1.12
ENSBTAT00000009406
12
ENSBTAE00000306240
chr15:
77012378-77012559
182
THRB_BOVIN
494-555
62
0
-
-
1.13
ENSBTAT00000009406
13
ENSBTAE00000076620
chr15:
77018853-77018923
71
THRB_BOVIN
555-578
24
0
-
-
1.14
ENSBTAT00000009406
14
ENSBTAE00000076621
chr15:
77019058-77019320
263
THRB_BOVIN
579-625
47
0
-
-
2.1a
ENST00000311907
1a
ENSE00001931088
chr11:
46740730-46740864
135
THRB_HUMAN
1-27
27
0
-
-
2.2a
ENST00000311907
2a
ENSE00001181543
chr11:
46741252-46741412
161
THRB_HUMAN
27-80
54
0
-
-
2.3
ENST00000311907
3
ENSE00001181538
chr11:
46742073-46742097
25
THRB_HUMAN
81-89
9
0
-
-
2.4
ENST00000311907
4
ENSE00001181532
chr11:
46742340-46742390
51
THRB_HUMAN
89-106
18
0
-
-
2.6a
ENST00000311907
6a
ENSE00001181527
chr11:
46744730-46744835
106
THRB_HUMAN
106-141
36
0
-
-
2.6c
ENST00000311907
6c
ENSE00001181524
chr11:
46744932-46745068
137
THRB_HUMAN
141-187
47
0
-
-
2.7b
ENST00000311907
7b
ENSE00001688723
chr11:
46747409-46747723
315
THRB_HUMAN
187-292
106
0
-
-
2.8
ENST00000311907
8
ENSE00002179953
chr11:
46748048-46748176
129
THRB_HUMAN
292-335
44
1
-
L:1D-1A
-
4
2.9
ENST00000311907
9
ENSE00001770269
chr11:
46748261-46748387
127
THRB_HUMAN
335-377
43
2
H:16-29
L:1A-14L
14
27
2.10
ENST00000311907
10
ENSE00001650441
chr11:
46749546-46749713
168
THRB_HUMAN
377-433
57
1
H:29-75
-
57
-
2.11b
ENST00000311907
11b
ENSE00001657931
chr11:
46750214-46750387
174
THRB_HUMAN
433-491
59
1
H:75-129B
-
59
-
2.12
ENST00000311907
12
ENSE00001646362
chr11:
46750930-46751111
182
THRB_HUMAN
491-552
62
1
H:129B-184 (gaps)
-
62
-
2.13
ENST00000311907
13
ENSE00001680217
chr11:
46760598-46760668
71
THRB_HUMAN
552-575
24
1
H:184-202
-
24
-
2.14c
ENST00000311907
14c
ENSE00001227030
chr11:
46760815-46761056
242
THRB_HUMAN
576-622
47
1
H:203-245 (gaps)
-
46
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2hpp_1 (L:,H:)
2a: SCOP_d2hppp_ (P:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Thrombin
(188)
Human (Homo sapiens) [TaxId: 9606]
(169)
1a
d2hpp.1
L:,H:
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Meizothrombin
(3)
Cow (Bos taurus) [TaxId: 9913]
(2)
2a
d2hppp_
P:
[
close SCOP info
]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2hppP00 (P:301-379)
2a: CATH_2hppH02 (H:28-120,H:233-245)
2b: CATH_2hppH01 (H:16-27,H:121-232)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
2hppP00
P:301-379
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
2a
2hppH02
H:28-120,H:233-245
2b
2hppH01
H:16-27,H:121-232
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
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Nucleic
Backbone
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Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain H
Chain L
Chain P
Asymmetric Unit 1
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Asym.Unit (69 KB)
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