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2HOR
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALLIINASE FROM GARLIC- APO FORM
Authors
:
L. J. W Shimon, A. Rabinkov, M. Wilcheck, D. Mirelman, F. Frolow
Date
:
16 Jul 06 (Deposition) - 06 Feb 07 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Alliinase; Garlic; Allium Sativum; Glycosylation; Plant Enzyme; Pyridoxal-5'-Phosphate; Aminoacrylate; Apo Form; , Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Shimon, A. Rabinkov, I. Shin, T. Miron, D. Mirelman, M. Wilchek, F. Frolow
Two Structures Of Alliinase From Alliium Sativum L. : Apo Form And Ternary Complex With Aminoacrylate Reaction Intermediate Covalently Bound To The Plp Cofactor.
J. Mol. Biol. V. 366 611 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(8, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: BETA-D-MANNOSE (BMAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: ALPHA-L-FUCOSE (FUCa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7a: NITRATE ION (NO3a)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CL
2
Ligand/Ion
CHLORIDE ION
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NO3
1
Ligand/Ion
NITRATE ION
8
SO4
5
Ligand/Ion
SULFATE ION
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , ALA A:149 , TYR A:174 , FUC A:501 , NAG A:503 , SO4 A:701 , HOH A:849 , HOH A:875 , HOH A:1124 , HOH A:1131
BINDING SITE FOR RESIDUE NAG A 500
02
AC2
SOFTWARE
GLU A:170 , ASN A:276 , LYS A:280 , NAG A:500 , NAG A:503 , HOH A:849 , HOH A:875 , HOH A:1137
BINDING SITE FOR RESIDUE FUC A 501
03
AC3
SOFTWARE
THR A:148 , LYS A:173 , NAG A:500 , FUC A:501 , BMA A:504 , SO4 A:701 , HOH A:849 , HOH A:991 , HOH A:1116
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
NAG A:503 , MAN A:505 , MAN A:506 , HOH A:1174 , HOH A:1177 , HOH A:1178 , HOH A:1201
BINDING SITE FOR RESIDUE BMA A 504
05
AC5
SOFTWARE
VAL A:391 , BMA A:504 , HOH A:995
BINDING SITE FOR RESIDUE MAN A 505
06
AC6
SOFTWARE
GLU A:114 , BMA A:504 , HOH A:876 , HOH A:1005
BINDING SITE FOR RESIDUE MAN A 506
07
AC7
SOFTWARE
ASN A:328 , GLN A:408 , PHE A:411 , HOH A:942 , HOH A:1018 , HOH A:1098
BINDING SITE FOR RESIDUE NAG A 555
08
AC8
SOFTWARE
GLY A:64 , TYR A:165 , ASN A:207 , LYS A:251 , GLN A:388 , ARG A:401 , HOH A:777 , HOH A:789 , HOH A:944 , HOH A:1095 , HOH A:1185
BINDING SITE FOR RESIDUE SO4 A 600
09
AC9
SOFTWARE
TYR A:92 , GLY A:131 , VAL A:132 , THR A:133 , THR A:248 , SER A:250 , ARG A:259 , HOH A:766 , HOH A:1053 , HOH A:1096
BINDING SITE FOR RESIDUE SO4 A 601
10
BC1
SOFTWARE
TYR A:165 , ASP A:225 , VAL A:227 , HOH A:766 , HOH A:1095 , HOH A:1096
BINDING SITE FOR RESIDUE ACT A 602
11
BC2
SOFTWARE
NAG A:500 , NAG A:503 , HOH A:1201
BINDING SITE FOR RESIDUE SO4 A 701
12
BC3
SOFTWARE
GLU A:22 , ASN A:42 , THR A:407 , GLN A:408 , ASP A:409 , HOH A:971 , HOH A:1115
BINDING SITE FOR RESIDUE SO4 A 702
13
BC4
SOFTWARE
LYS A:74 , GLN A:75 , HIS A:76 , LYS A:77 , GLU A:78 , HOH A:735
BINDING SITE FOR RESIDUE SO4 A 703
14
BC5
SOFTWARE
PHE A:93 , PHE A:94 , SER A:98 , PHE A:100
BINDING SITE FOR RESIDUE CL A 705
15
BC6
SOFTWARE
GLU A:114 , HOH A:1192
BINDING SITE FOR RESIDUE CL A 706
16
BC7
SOFTWARE
HIS A:137 , PHE A:175 , LYS A:177 , HOH A:1162
BINDING SITE FOR RESIDUE NO3 A 707
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (A:39-50)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
ALLN1_ALLSA
77-88
1
A:39-50
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hora_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
automated matches
(16)
Garlic (Allium sativum) [TaxId: 4682]
(2)
1a
d2hora_
A:
[
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]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2horA02 (A:101-310)
2a: CATH_2horA03 (A:311-423)
3a: CATH_2horA01 (A:1-100)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Garlic (Allium sativum)
(3)
1a
2horA02
A:101-310
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Garlic (Allium sativum)
(3)
2a
2horA03
A:311-423
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Alliin lyase; domain 1
(3)
Garlic (Allium sativum)
(3)
3a
2horA01
A:1-100
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (91 KB)
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Header - Biol.Unit 1
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