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2HMS
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (182 KB)
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(1)
Title
:
RECTANGULAR-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH NADH BOUND
Authors
:
R. A. Albright, J. H. Morais-Cabral
Date
:
11 Jul 06 (Deposition) - 26 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Rck, Ktn, Ktr, Ktra, Ktrab, Membrane Protein, Ion Transporter, Symporter
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. Albright, J. L. Ibar, C. U. Kim, S. M. Gruner, J. H. Morais-Cabral
The Rck Domain Of The Ktrab K(+) Transporter: Multiple Conformations Of An Octameric Ring.
Cell(Cambridge, Mass. ) V. 126 1147 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
1b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
1c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
1d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
View:
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No.
Name
Count
Type
Full Name
1
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:13 , GLY A:15 , ARG A:16 , ASP A:36 , ILE A:37 , ASN A:38 , ALA A:55 , ASN A:56 , ALA A:57 , ILE A:78 , GLY A:79 , ALA A:80 , LYS A:103 , GLU B:125 , NAI B:602
BINDING SITE FOR RESIDUE NAI A 601
2
AC2
SOFTWARE
NAI A:601 , GLY B:13 , LEU B:14 , GLY B:15 , ARG B:16 , ASP B:36 , ILE B:37 , ASN B:38 , LYS B:41 , ALA B:55 , ASN B:56 , ALA B:57 , THR B:58 , ILE B:78 , GLY B:79 , ALA B:80 , LYS B:103 , HOH B:604
BINDING SITE FOR RESIDUE NAI B 602
3
AC3
SOFTWARE
GLY C:13 , GLY C:15 , ARG C:16 , ASP C:36 , ILE C:37 , ASN C:38 , LYS C:41 , ALA C:55 , ASN C:56 , ALA C:57 , ILE C:78 , GLY C:79 , ALA C:80 , LYS C:103 , GLN C:105 , GLU D:125 , NAI D:604
BINDING SITE FOR RESIDUE NAI C 603
4
AC4
SOFTWARE
GLU C:125 , NAI C:603 , GLY D:13 , GLY D:15 , ARG D:16 , ASP D:36 , ILE D:37 , ASN D:38 , LYS D:41 , ALA D:55 , ASN D:56 , ALA D:57 , ILE D:78 , GLY D:79 , ALA D:80 , LYS D:103 , GLN D:105 , HOH D:610
BINDING SITE FOR RESIDUE NAI D 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: RCK_N (A:8-129,B:8-129,C:8-129,D:8-129)
2: RCK_C (A:139-144,B:139-140,C:139-144,D:13...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RCK_N
PS51201
RCK N-terminal domain profile.
KTRA_BACSU
8-129
4
A:8-129
B:8-129
C:8-129
D:8-129
2
RCK_C
PS51202
RCK C-terminal domain profile.
KTRA_BACSU
139-222
4
A:139-144
B:139-140
C:139-144
D:139-140
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2hmsa_ (A:)
1b: SCOP_d2hmsb_ (B:)
1c: SCOP_d2hmsc_ (C:)
1d: SCOP_d2hmsd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Potassium channel NAD-binding domain
(19)
Protein domain
:
Ktn bsu222
(6)
Bacillus subtilis [TaxId: 1423]
(6)
1a
d2hmsa_
A:
1b
d2hmsb_
B:
1c
d2hmsc_
C:
1d
d2hmsd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2hmsA00 (A:7-144)
1b: CATH_2hmsC00 (C:7-144)
1c: CATH_2hmsB00 (B:7-140)
1d: CATH_2hmsD00 (D:7-140)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Bacillus subtilis. Organism_taxid: 1423.
(9)
1a
2hmsA00
A:7-144
1b
2hmsC00
C:7-144
1c
2hmsB00
B:7-140
1d
2hmsD00
D:7-140
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Pfam Domains
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Asymmetric Unit 1
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