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2HMP
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
UNCOMPLEXED ACTIN CLEAVED WITH PROTEASE ECP32
Authors
:
V. A. Klenchin, S. Y. Khaitlina, I. Rayment
Date
:
11 Jul 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Actin Polymerization; Ecp32 Protease; G-Actin; F-Actin, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Klenchin, S. Y. Khaitlina, I. Rayment
Crystal Structure Of Polymerization-Competent Actin
J. Mol. Biol. V. 362 140 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 23)
Info
All Hetero Components
1a: 2,2',2''-NITRILOTRIETHANOL (211a)
1b: 2,2',2''-NITRILOTRIETHANOL (211b)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
4a: 4-METHYL-HISTIDINE (HICa)
4b: 4-METHYL-HISTIDINE (HICb)
5a: SPERMIDINE (SPDa)
6a: STRONTIUM ION (SRa)
6b: STRONTIUM ION (SRb)
6c: STRONTIUM ION (SRc)
6d: STRONTIUM ION (SRd)
6e: STRONTIUM ION (SRe)
6f: STRONTIUM ION (SRf)
6g: STRONTIUM ION (SRg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
211
2
Ligand/Ion
2,2',2''-NITRILOTRIETHANOL
2
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
4
HIC
2
Mod. Amino Acid
4-METHYL-HISTIDINE
5
SPD
1
Ligand/Ion
SPERMIDINE
6
SR
7
Ligand/Ion
STRONTIUM ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ATP A:5381 , HOH A:6604 , HOH A:6607 , HOH A:6608 , HOH A:6609 , HOH A:6610
BINDING SITE FOR RESIDUE SR A 1391
02
AC2
SOFTWARE
ATP B:5382 , HOH B:6607 , HOH B:6619 , HOH B:6626 , HOH B:6627 , HOH B:6640
BINDING SITE FOR RESIDUE SR B 1392
03
AC3
SOFTWARE
GLU A:125 , ASN A:128 , HOH A:6910 , HOH A:6945 , HOH A:6951 , HOH A:6952
BINDING SITE FOR RESIDUE SR A 2001
04
AC4
SOFTWARE
HOH A:6793 , HOH A:6816 , HOH A:6822 , HOH A:6837 , HOH A:6885 , HOH A:6896 , HOH A:6917
BINDING SITE FOR RESIDUE SR A 2002
05
AC5
SOFTWARE
ASP A:363 , GLU B:125 , ASN B:128 , HOH B:6647 , HOH B:6715 , HOH B:6719 , HOH B:6759 , HOH B:6807
BINDING SITE FOR RESIDUE SR B 2003
06
AC6
SOFTWARE
VAL B:30 , HOH B:6675 , HOH B:6685 , HOH B:6766 , HOH B:6793
BINDING SITE FOR RESIDUE SR B 2004
07
AC7
SOFTWARE
HOH A:6839 , HOH A:6855 , HOH B:6711 , HOH B:6824 , HOH B:6825
BINDING SITE FOR RESIDUE SR B 2005
08
AC8
SOFTWARE
SER A:145 , GLY A:146 , ARG A:147 , ASN A:296 , GLN B:353 , GLN B:354
BINDING SITE FOR RESIDUE SPD A 5400
09
AC9
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , SR A:1391 , HOH A:6604 , HOH A:6608 , HOH A:6612 , HOH A:6617 , HOH A:6629 , HOH A:6657 , HOH A:6738 , HOH A:6751
BINDING SITE FOR RESIDUE ATP A 5381
10
BC1
SOFTWARE
GLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , ARG B:210 , LYS B:213 , GLU B:214 , GLY B:301 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , LYS B:336 , SR B:1392 , HOH B:6604 , HOH B:6607 , HOH B:6626 , HOH B:6645 , HOH B:6646 , HOH B:6728 , HOH B:6743
BINDING SITE FOR RESIDUE ATP B 5382
11
BC2
SOFTWARE
ALA A:310 , GLN A:314 , ILE A:329
BINDING SITE FOR RESIDUE EDO A 5500
12
BC3
SOFTWARE
GLY A:23 , ASP A:24 , ASP A:25 , SER A:344 , HOH A:6948
BINDING SITE FOR RESIDUE EDO A 5501
13
BC4
SOFTWARE
TYR A:188 , ARG A:256 , PHE A:266 , EDO A:5503 , HOH A:6757 , ALA B:231
BINDING SITE FOR RESIDUE EDO A 5502
14
BC5
SOFTWARE
GLU A:195 , ARG A:256 , EDO A:5502 , HOH A:6723 , HOH A:6753 , ARG B:196 , ALA B:230 , ASN B:252
BINDING SITE FOR RESIDUE EDO A 5503
15
BC6
SOFTWARE
TYR A:198 , SER A:199 , PHE A:200 , HOH A:6746
BINDING SITE FOR RESIDUE EDO A 5504
16
BC7
SOFTWARE
GLY B:23 , ASP B:24 , ASP B:25 , SER B:344 , HOH B:6790
BINDING SITE FOR RESIDUE EDO B 5505
17
BC8
SOFTWARE
ALA A:29 , VAL A:30 , HOH A:6766
BINDING SITE FOR RESIDUE EDO A 5506
18
BC9
SOFTWARE
ALA B:144 , SER B:145 , PRO B:332 , GLU B:334 , SER B:338 , HOH B:6620 , HOH B:6763 , HOH B:6809
BINDING SITE FOR RESIDUE EDO B 5507
19
CC1
SOFTWARE
ALA A:135 , ILE A:136 , VAL A:139 , TYR A:143 , PHE A:375
BINDING SITE FOR RESIDUE EDO A 5508
20
CC2
SOFTWARE
THR A:351 , TYR B:143 , THR B:148 , GLU B:167
BINDING SITE FOR RESIDUE 211 B 6600
21
CC3
SOFTWARE
THR A:148 , GLU A:167 , THR B:351
BINDING SITE FOR RESIDUE 211 A 6601
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63,B:53-63)
2: ACTINS_ACT_LIKE (A:104-116,B:104-116)
3: ACTINS_2 (A:356-364,B:356-364)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
2
A:53-63
B:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
2
A:104-116
B:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
2
A:356-364
B:356-364
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2hmpa1 (A:5-146)
1b: SCOP_d2hmpa2 (A:147-375)
1c: SCOP_d2hmpb1 (B:5-146)
1d: SCOP_d2hmpb2 (B:147-375)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
1a
d2hmpa1
A:5-146
1b
d2hmpa2
A:147-375
1c
d2hmpb1
B:5-146
1d
d2hmpb2
B:147-375
[
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]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2hmpB01 (B:5-137,B:339-375)
1b: CATH_2hmpA01 (A:5-137,A:339-375)
1c: CATH_2hmpA02 (A:138-179,A:272-338)
1d: CATH_2hmpB02 (B:138-179,B:272-338)
2a: CATH_2hmpA03 (A:180-271)
2b: CATH_2hmpB03 (B:180-271)
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2hmpB01
B:5-137,B:339-375
1b
2hmpA01
A:5-137,A:339-375
1c
2hmpA02
A:138-179,A:272-338
1d
2hmpB02
B:138-179,B:272-338
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
2hmpA03
A:180-271
2b
2hmpB03
B:180-271
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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