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2HMG
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
REFINEMENT OF THE INFLUENZA VIRUS HEMAGGLUTININ BY SIMULATED ANNEALING
Authors
:
W. I. Weis, A. T. Bruenger, J. J. Skehel, D. C. Wiley
Date
:
11 Sep 89 (Deposition) - 15 Jan 91 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Influenza Virus Hemagglutinin, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. I. Weis, A. T. Brunger, J. J. Skehel, D. C. Wiley
Refinement Of The Influenza Virus Hemagglutinin By Simulate Annealing.
J. Mol. Biol. V. 212 737 1990
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 21)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , LEU B:52
BINDING SITE FOR RESIDUE NAG A 329
02
AC2
SOFTWARE
GLN A:80 , ASN A:81 , PHE A:120 , ILE A:121
BINDING SITE FOR RESIDUE NAG A 334
03
AC3
SOFTWARE
ASN A:165 , THR A:167 , NAG A:340 , SER E:219
BINDING SITE FOR RESIDUE NAG A 339
04
AC4
SOFTWARE
NAG A:339 , BMA A:341 , PRO E:221 , TRP E:222
BINDING SITE FOR RESIDUE NAG A 340
05
AC5
SOFTWARE
NAG A:340 , TRP E:222
BINDING SITE FOR RESIDUE BMA A 341
06
AC6
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297
BINDING SITE FOR RESIDUE NAG A 348
07
AC7
SOFTWARE
ALA B:147 , GLU B:150 , ASN B:154 , THR B:156
BINDING SITE FOR RESIDUE NAG B 401
08
AC8
SOFTWARE
ASN C:38 , THR C:318 , LEU D:52
BINDING SITE FOR RESIDUE NAG C 329
09
AC9
SOFTWARE
GLN C:80 , ASN C:81 , PHE C:120 , ILE C:121
BINDING SITE FOR RESIDUE NAG C 334
10
BC1
SOFTWARE
SER A:219 , ASN C:165 , THR C:167 , NAG C:340
BINDING SITE FOR RESIDUE NAG C 339
11
BC2
SOFTWARE
PRO A:221 , TRP A:222 , NAG C:339 , BMA C:341
BINDING SITE FOR RESIDUE NAG C 340
12
BC3
SOFTWARE
NAG C:340
BINDING SITE FOR RESIDUE BMA C 341
13
BC4
SOFTWARE
SER C:45 , ASN C:285 , VAL C:297 , ASN C:298
BINDING SITE FOR RESIDUE NAG C 348
14
BC5
SOFTWARE
ALA D:147 , GLU D:150 , ASN D:154 , THR D:156
BINDING SITE FOR RESIDUE NAG D 401
15
BC6
SOFTWARE
ASN E:38 , THR E:318 , LEU F:52
BINDING SITE FOR RESIDUE NAG E 329
16
BC7
SOFTWARE
GLN E:80 , ASN E:81 , PHE E:120 , ILE E:121
BINDING SITE FOR RESIDUE NAG E 334
17
BC8
SOFTWARE
SER C:219 , ASN E:165 , THR E:167 , NAG E:340 , SER F:29
BINDING SITE FOR RESIDUE NAG E 339
18
BC9
SOFTWARE
PRO C:221 , TRP C:222 , NAG E:339 , BMA E:341 , SER F:29
BINDING SITE FOR RESIDUE NAG E 340
19
CC1
SOFTWARE
NAG E:340
BINDING SITE FOR RESIDUE BMA E 341
20
CC2
SOFTWARE
SER E:45 , ASN E:285 , VAL E:297 , ASN E:298
BINDING SITE FOR RESIDUE NAG E 348
21
CC3
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154 , THR F:156
BINDING SITE FOR RESIDUE NAG F 401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2hmga_ (A:)
1b: SCOP_d2hmgc_ (C:)
1c: SCOP_d2hmge_ (E:)
2a: SCOP_d2hmgb_ (B:)
2b: SCOP_d2hmgd_ (D:)
2c: SCOP_d2hmgf_ (F:)
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Classes
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)
(
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Folds
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Superfamilies
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(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d2hmga_
A:
1b
d2hmgc_
C:
1c
d2hmge_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d2hmgb_
B:
2b
d2hmgd_
D:
2c
d2hmgf_
F:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2hmgA01 (A:57-272)
1b: CATH_2hmgC01 (C:57-272)
1c: CATH_2hmgE01 (E:57-272)
2a: CATH_2hmgB00 (B:1-175)
2b: CATH_2hmgD00 (D:1-175)
2c: CATH_2hmgF00 (F:1-175)
View:
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)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/hongkong/19/68(h3n2)). Organism_taxid: 220997. Strain: (a/hongkong/19/68(h3n2)). Variant: (a/hongkong/19/68(h3n2)).
(1)
1a
2hmgA01
A:57-272
1b
2hmgC01
C:57-272
1c
2hmgE01
E:57-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/hongkong/19/68(h3n2)). Organism_taxid: 220997. Strain: (a/hongkong/19/68(h3n2)). Variant: (a/hongkong/19/68(h3n2)).
(1)
2a
2hmgB00
B:1-175
2b
2hmgD00
D:1-175
2c
2hmgF00
F:1-175
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (254 KB)
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