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2HKN
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CAP-GLY DOMAIN OF HUMAN DYNACTIN-1 (P150-GLUED)
Authors
:
S. Honnappa, F. K. Winkler, M. O. Steinmetz
Date
:
05 Jul 06 (Deposition) - 12 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Microtubule Binding, Cytoskeleton Associated Protein, P150-Glued, Strand Swap, Eb1 And Clip-170 Binding Protein, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Honnappa, O. Okhrimenko, R. Jaussi, H. Jawhari, I. Jelesarov, F. K. Winkler, M. O. Steinmetz
Key Interaction Modes Of Dynamic +Tip Networks.
Mol. Cell V. 23 663 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071452 (F52L, chain A/B, )
2: VAR_015850 (G59S, chain A/B, )
3: VAR_063867 (G71A, chain A/B, )
4: VAR_063868 (G71E, chain A/B, )
5: VAR_063869 (G71R, chain A/B, )
6: VAR_063870 (T72P, chain A/B, )
7: VAR_063871 (Q74P, chain A/B, )
8: VAR_071453 (Y78C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071452
F
52
L
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
F
52
L
2
UniProt
VAR_015850
G
59
S
DCTN1_HUMAN
Disease (HMN7B)
---
A/B
G
59
S
3
UniProt
VAR_063867
G
71
A
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
G
71
A
4
UniProt
VAR_063868
G
71
E
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
G
71
E
5
UniProt
VAR_063869
G
71
R
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
G
71
R
6
UniProt
VAR_063870
T
72
P
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
T
72
P
7
UniProt
VAR_063871
Q
74
P
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
Q
74
P
8
UniProt
VAR_071453
Y
78
C
DCTN1_HUMAN
Disease (PERRYS)
---
A/B
Y
78
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CAP_GLY_1 (A:48-79,B:48-79)
2: CAP_GLY_2 (A:48-90,B:48-90)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CAP_GLY_1
PS00845
CAP-Gly domain signature.
DCTN1_HUMAN
48-79
2
A:48-79
B:48-79
2
CAP_GLY_2
PS50245
CAP-Gly domain profile.
DCTN1_HUMAN
48-90
2
A:48-90
B:48-90
[
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]
Exons
(2, 4)
Info
All Exons
Exon 1.9d (A:16-93 (gaps) | B:26-93)
Exon 1.10b (A:94-97 | B:94-97)
View:
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Label:
All Exon Boundaries
1: Boundary 1.7a/1.9d
2: Boundary 1.9d/1.10b
3: Boundary 1.10b/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7a
ENST00000361874
7a
ENSE00001940242
chr2:
74607482-74607132
351
DCTN1_HUMAN
1-11
11
0
-
-
1.9d
ENST00000361874
9d
ENSE00001606774
chr2:
74605372-74605127
246
DCTN1_HUMAN
12-93
82
2
A:16-93 (gaps)
B:26-93
78
68
1.10b
ENST00000361874
10b
ENSE00000762538
chr2:
74604853-74604775
79
DCTN1_HUMAN
94-120
27
2
A:94-97
B:94-97
4
4
1.11a
ENST00000361874
11a
ENSE00002160083
chr2:
74604593-74604559
35
DCTN1_HUMAN
120-131
12
0
-
-
1.13a
ENST00000361874
13a
ENSE00001408363
chr2:
74603889-74603869
21
DCTN1_HUMAN
132-138
7
0
-
-
1.14c
ENST00000361874
14c
ENSE00001744349
chr2:
74601467-74601450
18
DCTN1_HUMAN
139-144
6
0
-
-
1.16c
ENST00000361874
16c
ENSE00001426050
chr2:
74600075-74600055
21
DCTN1_HUMAN
145-151
7
0
-
-
1.17e
ENST00000361874
17e
ENSE00001261719
chr2:
74598855-74598664
192
DCTN1_HUMAN
152-215
64
0
-
-
1.17h
ENST00000361874
17h
ENSE00001261373
chr2:
74598303-74598106
198
DCTN1_HUMAN
216-281
66
0
-
-
1.18
ENST00000361874
18
ENSE00000762534
chr2:
74597952-74597748
205
DCTN1_HUMAN
282-350
69
0
-
-
1.19
ENST00000361874
19
ENSE00001261359
chr2:
74597671-74597593
79
DCTN1_HUMAN
350-376
27
0
-
-
1.20
ENST00000361874
20
ENSE00001261354
chr2:
74597472-74597313
160
DCTN1_HUMAN
376-429
54
0
-
-
1.21
ENST00000361874
21
ENSE00000762531
chr2:
74597196-74597092
105
DCTN1_HUMAN
430-464
35
0
-
-
1.22a
ENST00000361874
22a
ENSE00001261342
chr2:
74596618-74596427
192
DCTN1_HUMAN
465-528
64
0
-
-
1.23
ENST00000361874
23
ENSE00001261333
chr2:
74596341-74596225
117
DCTN1_HUMAN
529-567
39
0
-
-
1.24a
ENST00000361874
24a
ENSE00000762527
chr2:
74596007-74595855
153
DCTN1_HUMAN
568-618
51
0
-
-
1.24c
ENST00000361874
24c
ENSE00001261323
chr2:
74595258-74595098
161
DCTN1_HUMAN
619-672
54
0
-
-
1.25
ENST00000361874
25
ENSE00001694213
chr2:
74594991-74594823
169
DCTN1_HUMAN
672-728
57
0
-
-
1.26
ENST00000361874
26
ENSE00001758208
chr2:
74594547-74594479
69
DCTN1_HUMAN
729-751
23
0
-
-
1.27
ENST00000361874
27
ENSE00001726995
chr2:
74594234-74594172
63
DCTN1_HUMAN
752-772
21
0
-
-
1.28a
ENST00000361874
28a
ENSE00001199793
chr2:
74594059-74593910
150
DCTN1_HUMAN
773-822
50
0
-
-
1.28c
ENST00000361874
28c
ENSE00001199788
chr2:
74593747-74593586
162
DCTN1_HUMAN
823-876
54
0
-
-
1.28f
ENST00000361874
28f
ENSE00001777917
chr2:
74593502-74593371
132
DCTN1_HUMAN
877-920
44
0
-
-
1.29c
ENST00000361874
29c
ENSE00001714582
chr2:
74593145-74593020
126
DCTN1_HUMAN
921-962
42
0
-
-
1.30a
ENST00000361874
30a
ENSE00001805744
chr2:
74592784-74592642
143
DCTN1_HUMAN
963-1010
48
0
-
-
1.30e
ENST00000361874
30e
ENSE00001635537
chr2:
74592368-74592202
167
DCTN1_HUMAN
1010-1066
57
0
-
-
1.31b
ENST00000361874
31b
ENSE00001749721
chr2:
74590755-74590741
15
DCTN1_HUMAN
1066-1071
6
0
-
-
1.31c
ENST00000361874
31c
ENSE00001714864
chr2:
74590554-74590421
134
DCTN1_HUMAN
1071-1115
45
0
-
-
1.32
ENST00000361874
32
ENSE00001616375
chr2:
74590304-74590121
184
DCTN1_HUMAN
1116-1177
62
0
-
-
1.33b
ENST00000361874
33b
ENSE00001641035
chr2:
74589856-74589777
80
DCTN1_HUMAN
1177-1203
27
0
-
-
1.34a
ENST00000361874
34a
ENSE00001788775
chr2:
74589268-74589179
90
DCTN1_HUMAN
1204-1233
30
0
-
-
1.35g
ENST00000361874
35g
ENSE00001902273
chr2:
74588763-74588281
483
DCTN1_HUMAN
1234-1278
45
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hkna_ (A:)
1b: SCOP_d2hknb_ (B:)
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Cap-Gly domain
(30)
Family
:
Cap-Gly domain
(29)
Protein domain
:
Dynactin 1
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2hkna_
A:
1b
d2hknb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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