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2HK5
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
HCK KINASE IN COMPLEX WITH LCK TARGETTED INHIBITOR PG-1009247
Authors
:
R. L. Walter, M. J. Mekel, A. G. Evdokimov, M. E. Pokross, M. P. Sabat
Date
:
03 Jul 06 (Deposition) - 05 Sep 06 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hck, Src-Family, Kinase Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sabat, J. C. Vanrens, M. J. Laufersweiler, T. A. Brugel, J. Maier, A. Golebiowski, B. De, V. Easwaran, L. C. Hsieh, R. L. Walter, M. J. Mekel, A. Evdokimov, M. J. Janusz
The Development Of 2-Benzimidazole Substituted Pyrimidine Based Inhibitors Of Lymphocyte Specific Kinase (Lck).
Bioorg. Med. Chem. Lett. V. 16 5973 2006
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3-{[2-(1H-BENZIMIDAZOL-1-YL)-6-{[2... (1BMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1BM
1
Ligand/Ion
3-{[2-(1H-BENZIMIDAZOL-1-YL)-6-{[2-(DIETHYLAMINO)ETHYL]AMINO}PYRIMIDIN-4-YL]AMINO}-4-METHYLPHENOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:271 , LYS A:273 , GLU A:288 , ILE A:314 , THR A:316 , PHE A:318 , MET A:319 , GLY A:322 , ALA A:368 , ASN A:369 , LEU A:371 , ASP A:382 , HOH A:533
BINDING SITE FOR RESIDUE 1BM A 499
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041709 (D382G, chain A, )
2: VAR_033836 (P485Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041709
D
399
G
HCK_HUMAN
Unclassified
---
A
D
382
G
2
UniProt
VAR_033836
P
502
Q
HCK_HUMAN
Polymorphism
17093828
A
P
485
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:251-273)
2: PROTEIN_KINASE_TYR (A:360-372)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
HCK_HUMAN
268-290
1
A:251-273
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
HCK_HUMAN
377-389
1
A:360-372
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Exons
(6, 6)
Info
All Exons
Exon 1.10 (A:229-262)
Exon 1.11 (A:262-322)
Exon 1.12 (A:322-347)
Exon 1.13 (A:348-399)
Exon 1.14 (A:399-443)
Exon 1.15d (A:443-497)
View:
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14
6: Boundary 1.14/1.15d
7: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000375852
1c
ENSE00002183369
chr20:
30640064-30640289
226
HCK_HUMAN
1-21
21
0
-
-
1.4a
ENST00000375852
4a
ENSE00001592701
chr20:
30659465-30659585
121
HCK_HUMAN
21-61
41
0
-
-
1.5
ENST00000375852
5
ENSE00000661152
chr20:
30661122-30661164
43
HCK_HUMAN
62-76
15
0
-
-
1.6a
ENST00000375852
6a
ENSE00000661153
chr20:
30661519-30661621
103
HCK_HUMAN
76-110
35
0
-
-
1.7
ENST00000375852
7
ENSE00000661154
chr20:
30662426-30662524
99
HCK_HUMAN
110-143
34
0
-
-
1.8
ENST00000375852
8
ENSE00000661155
chr20:
30667577-30667680
104
HCK_HUMAN
143-178
36
0
-
-
1.9
ENST00000375852
9
ENSE00000661156
chr20:
30671697-30671846
150
HCK_HUMAN
178-228
51
0
-
-
1.10
ENST00000375852
10
ENSE00000661157
chr20:
30672194-30672346
153
HCK_HUMAN
228-279
52
1
A:229-262
34
1.11
ENST00000375852
11
ENSE00000661158
chr20:
30674431-30674610
180
HCK_HUMAN
279-339
61
1
A:262-322
61
1.12
ENST00000375852
12
ENSE00000661159
chr20:
30676371-30676447
77
HCK_HUMAN
339-364
26
1
A:322-347
26
1.13
ENST00000375852
13
ENSE00001612642
chr20:
30681666-30681819
154
HCK_HUMAN
365-416
52
1
A:348-399
52
1.14
ENST00000375852
14
ENSE00001636203
chr20:
30686807-30686938
132
HCK_HUMAN
416-460
45
1
A:399-443
45
1.15d
ENST00000375852
15d
ENSE00001468583
chr20:
30689120-30689659
540
HCK_HUMAN
460-526
67
1
A:443-497
55
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hk5a_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Haemopoetic cell kinase Hck
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d2hk5a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2hk5A01 (A:229-318)
2a: CATH_2hk5A02 (A:319-497)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2hk5A01
A:229-318
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2hk5A02
A:319-497
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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