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2HJR
Biol. Unit 1
Info
Asym.Unit (610 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 10 (109 KB)
Biol.Unit 11 (109 KB)
Biol.Unit 12 (109 KB)
Biol.Unit 13 (108 KB)
Biol.Unit 14 (108 KB)
Biol.Unit 15 (109 KB)
Biol.Unit 2 (108 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (109 KB)
Biol.Unit 5 (108 KB)
Biol.Unit 6 (109 KB)
Biol.Unit 7 (207 KB)
Biol.Unit 8 (207 KB)
Biol.Unit 9 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM MALATE DEHYDROGENASE
Authors
:
A. K. Wernimont, A. Dong, J. Lew, A. Hassani, H. Ren, W. Qiu, I. Kozieradzki, J. Weigelt, M. Sundstrom, A. M. Edwards, C. H. Arrowsmith, A. Bochkarev, R. Hui, M. Amani, Structural Genomics Consortium (Sgc)
Date
:
30 Jun 06 (Deposition) - 01 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: E,F,G,H (1x)
Biol. Unit 8: A,B,C,D (1x)
Biol. Unit 9: I,J,K,L (1x)
Biol. Unit 10: I,L (1x)
Biol. Unit 11: F,H (1x)
Biol. Unit 12: B,C (1x)
Biol. Unit 13: E,G (1x)
Biol. Unit 14: J,K (1x)
Biol. Unit 15: A,D (1x)
Keywords
:
Malate Dehydrogenase, Malaria, Cryptosporidium Parvum, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5-DIPHOSPHORIBOSE (APRa)
1b: ADENOSINE-5-DIPHOSPHORIBOSE (APRb)
1c: ADENOSINE-5-DIPHOSPHORIBOSE (APRc)
1d: ADENOSINE-5-DIPHOSPHORIBOSE (APRd)
1e: ADENOSINE-5-DIPHOSPHORIBOSE (APRe)
1f: ADENOSINE-5-DIPHOSPHORIBOSE (APRf)
1g: ADENOSINE-5-DIPHOSPHORIBOSE (APRg)
1h: ADENOSINE-5-DIPHOSPHORIBOSE (APRh)
1i: ADENOSINE-5-DIPHOSPHORIBOSE (APRi)
1j: ADENOSINE-5-DIPHOSPHORIBOSE (APRj)
1k: ADENOSINE-5-DIPHOSPHORIBOSE (APRk)
1l: ADENOSINE-5-DIPHOSPHORIBOSE (APRl)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
2c: CITRIC ACID (CITc)
2d: CITRIC ACID (CITd)
2e: CITRIC ACID (CITe)
2f: CITRIC ACID (CITf)
2g: CITRIC ACID (CITg)
2h: CITRIC ACID (CITh)
2i: CITRIC ACID (CITi)
2j: CITRIC ACID (CITj)
2k: CITRIC ACID (CITk)
2l: CITRIC ACID (CITl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APR
2
Ligand/Ion
ADENOSINE-5-DIPHOSPHORIBOSE
2
CIT
2
Ligand/Ion
CITRIC ACID
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:94 , ARG A:100 , ASN A:132 , MET A:155 , ARG A:163 , HIS A:187 , GLY A:230 , ALA A:242 , PRO A:246 , HOH A:3028 , HOH A:3094
BINDING SITE FOR RESIDUE CIT A 2001
2
AC2
SOFTWARE
ILE B:25 , ARG B:94 , ARG B:100 , ILE B:130 , ASN B:132 , LEU B:159 , ARG B:163 , HIS B:187 , GLY B:230 , ALA B:242 , APR B:3012 , HOH B:3024 , HOH B:3042 , HOH B:3064 , HOH B:3138
BINDING SITE FOR RESIDUE CIT B 2002
3
BC4
SOFTWARE
GLY A:21 , GLY A:23 , GLN A:24 , ILE A:25 , ASP A:45 , ILE A:46 , ILE A:47 , TYR A:77 , THR A:89 , ALA A:90 , GLY A:91 , VAL A:92 , PRO A:93 , ASN A:107 , ILE A:110 , THR A:131 , ASN A:132 , HOH A:3014 , HOH A:3023 , HOH A:3028 , HOH A:3039 , HOH A:3041 , HOH A:3075 , HOH A:3078 , HOH A:3080
BINDING SITE FOR RESIDUE APR A 3001
4
BC5
SOFTWARE
GLY B:23 , GLN B:24 , ILE B:25 , ASP B:45 , ILE B:46 , ILE B:47 , TYR B:77 , THR B:89 , ALA B:90 , GLY B:91 , VAL B:92 , PRO B:93 , ASN B:107 , THR B:131 , ASN B:132 , CIT B:2002 , HOH B:3015 , HOH B:3020 , HOH B:3045 , HOH B:3058 , HOH B:3064 , HOH B:3076 , HOH B:3096 , HOH B:3103 , HOH B:3107
BINDING SITE FOR RESIDUE APR B 3012
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2hjra2 (A:155-325)
1b: SCOP_d2hjri2 (I:155-325)
1c: SCOP_d2hjrj2 (J:155-326)
1d: SCOP_d2hjrk2 (K:155-325)
1e: SCOP_d2hjrl2 (L:155-326)
1f: SCOP_d2hjrb2 (B:155-326)
1g: SCOP_d2hjrc2 (C:155-326)
1h: SCOP_d2hjrd2 (D:155-326)
1i: SCOP_d2hjre2 (E:155-325)
1j: SCOP_d2hjrf2 (F:155-326)
1k: SCOP_d2hjrg2 (G:155-325)
1l: SCOP_d2hjrh2 (H:155-326)
2a: SCOP_d2hjra1 (A:13-154)
2b: SCOP_d2hjri1 (I:13-154)
2c: SCOP_d2hjrj1 (J:13-154)
2d: SCOP_d2hjrk1 (K:13-154)
2e: SCOP_d2hjrl1 (L:13-154)
2f: SCOP_d2hjrb1 (B:13-154)
2g: SCOP_d2hjrc1 (C:13-154)
2h: SCOP_d2hjrd1 (D:13-154)
2i: SCOP_d2hjre1 (E:13-154)
2j: SCOP_d2hjrf1 (F:13-154)
2k: SCOP_d2hjrg1 (G:13-154)
2l: SCOP_d2hjrh1 (H:13-154)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Cryptosporidium parvum [TaxId: 5807]
(2)
1a
d2hjra2
A:155-325
1b
d2hjri2
I:155-325
1c
d2hjrj2
J:155-326
1d
d2hjrk2
K:155-325
1e
d2hjrl2
L:155-326
1f
d2hjrb2
B:155-326
1g
d2hjrc2
C:155-326
1h
d2hjrd2
D:155-326
1i
d2hjre2
E:155-325
1j
d2hjrf2
F:155-326
1k
d2hjrg2
G:155-325
1l
d2hjrh2
H:155-326
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Cryptosporidium parvum [TaxId: 5807]
(2)
2a
d2hjra1
A:13-154
2b
d2hjri1
I:13-154
2c
d2hjrj1
J:13-154
2d
d2hjrk1
K:13-154
2e
d2hjrl1
L:13-154
2f
d2hjrb1
B:13-154
2g
d2hjrc1
C:13-154
2h
d2hjrd1
D:13-154
2i
d2hjre1
E:13-154
2j
d2hjrf1
F:13-154
2k
d2hjrg1
G:13-154
2l
d2hjrh1
H:13-154
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2hjrA01 (A:13-156)
1b: CATH_2hjrI01 (I:13-156)
1c: CATH_2hjrJ01 (J:13-156)
1d: CATH_2hjrK01 (K:13-156)
1e: CATH_2hjrL01 (L:13-156)
1f: CATH_2hjrB01 (B:13-156)
1g: CATH_2hjrC01 (C:13-156)
1h: CATH_2hjrD01 (D:13-156)
1i: CATH_2hjrE01 (E:13-156)
1j: CATH_2hjrF01 (F:13-156)
1k: CATH_2hjrG01 (G:13-156)
1l: CATH_2hjrH01 (H:13-156)
2a: CATH_2hjrA02 (A:157-325)
2b: CATH_2hjrF02 (F:157-326)
2c: CATH_2hjrH02 (H:157-326)
2d: CATH_2hjrJ02 (J:157-326)
2e: CATH_2hjrL02 (L:157-326)
2f: CATH_2hjrE02 (E:157-325)
2g: CATH_2hjrG02 (G:157-325)
2h: CATH_2hjrI02 (I:157-325)
2i: CATH_2hjrK02 (K:157-325)
2j: CATH_2hjrB02 (B:157-326)
2k: CATH_2hjrC02 (C:157-326)
2l: CATH_2hjrD02 (D:157-326)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Cryptosporidium parvum. Organism_taxid: 5807.
(5)
1a
2hjrA01
A:13-156
1b
2hjrI01
I:13-156
1c
2hjrJ01
J:13-156
1d
2hjrK01
K:13-156
1e
2hjrL01
L:13-156
1f
2hjrB01
B:13-156
1g
2hjrC01
C:13-156
1h
2hjrD01
D:13-156
1i
2hjrE01
E:13-156
1j
2hjrF01
F:13-156
1k
2hjrG01
G:13-156
1l
2hjrH01
H:13-156
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Cryptosporidium parvum. Organism_taxid: 5807.
(2)
2a
2hjrA02
A:157-325
2b
2hjrF02
F:157-326
2c
2hjrH02
H:157-326
2d
2hjrJ02
J:157-326
2e
2hjrL02
L:157-326
2f
2hjrE02
E:157-325
2g
2hjrG02
G:157-325
2h
2hjrI02
I:157-325
2i
2hjrK02
K:157-325
2j
2hjrB02
B:157-326
2k
2hjrC02
C:157-326
2l
2hjrD02
D:157-326
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (610 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Biol.Unit 10 (109 KB)
Header - Biol.Unit 10
Biol.Unit 11 (109 KB)
Header - Biol.Unit 11
Biol.Unit 12 (109 KB)
Header - Biol.Unit 12
Biol.Unit 13 (108 KB)
Header - Biol.Unit 13
Biol.Unit 14 (108 KB)
Header - Biol.Unit 14
Biol.Unit 15 (109 KB)
Header - Biol.Unit 15
Biol.Unit 2 (108 KB)
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Biol.Unit 3 (108 KB)
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Biol.Unit 4 (109 KB)
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Biol.Unit 5 (108 KB)
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Biol.Unit 6 (109 KB)
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Biol.Unit 7 (207 KB)
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Biol.Unit 8 (207 KB)
Header - Biol.Unit 8
Biol.Unit 9 (206 KB)
Header - Biol.Unit 9
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