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2HJ3
Biol. Unit 3
Info
Asym.Unit (46 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
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(1)
Title
:
STRUCTURE OF THE ARABIDOPSIS THALIANA ERV1 THIOL OXIDASE
Authors
:
E. Vitu, D. Fass
Date
:
30 Jun 06 (Deposition) - 22 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Four-Helix Bundle, Flavin Adenine Dinucleotide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Vitu, M. Bentzur, T. Lisowsky, C. A. Kaiser, D. Fass
Gain Of Function In An Erv/Alr Sulfhydryl Oxidase By Molecular Engineering Of The Shuttle Disulfide.
J. Mol. Biol. V. 362 89 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
SO4
24
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:34 , ARG A:35 , HOH A:1011 , HOH A:1012
BINDING SITE FOR RESIDUE SO4 A 500
02
AC2
SOFTWARE
LYS A:95 , LEU A:96 , ARG A:102 , FAD A:1001
BINDING SITE FOR RESIDUE SO4 A 501
03
AC3
SOFTWARE
THR B:34 , ARG B:35 , HOH B:2048
BINDING SITE FOR RESIDUE SO4 B 502
04
AC4
SOFTWARE
ARG A:50 , LYS A:62 , ARG A:66 , HOH A:1054
BINDING SITE FOR RESIDUE SO4 A 503
05
AC5
SOFTWARE
LYS A:38 , SO4 A:510 , HOH A:1045 , LYS B:42 , ALA B:70 , GLN B:71 , ALA B:72 , GLY B:73 , GLU B:77 , HOH B:2037
BINDING SITE FOR RESIDUE SO4 B 504
06
AC6
SOFTWARE
HIS A:84 , HOH A:1022 , HIS B:84 , ASN B:87 , ARG B:91 , VAL B:97 , HOH B:2022 , HOH B:2028 , HOH B:2053
BINDING SITE FOR RESIDUE SO4 B 505
07
AC7
SOFTWARE
HIS A:84 , ASN A:87 , ARG A:91 , VAL A:97 , HOH A:1017 , HOH A:1023 , HOH B:2054
BINDING SITE FOR RESIDUE SO4 A 506
08
AC8
SOFTWARE
GLU A:43 , THR A:46 , ARG A:50 , HOH A:1035
BINDING SITE FOR RESIDUE SO4 A 507
09
AC9
SOFTWARE
LYS A:39 , HOH A:1020 , HOH A:1060 , GLU B:43 , ARG B:50
BINDING SITE FOR RESIDUE SO4 A 508
10
BC1
SOFTWARE
HIS A:60 , GLU A:63 , GLY B:94 , LYS B:95 , HOH B:2014
BINDING SITE FOR RESIDUE SO4 A 509
11
BC2
SOFTWARE
LYS A:42 , GLY B:73 , GLU B:77 , SO4 B:504 , HOH B:2037
BINDING SITE FOR RESIDUE SO4 A 510
12
BC3
SOFTWARE
ARG B:50 , LYS B:62 , ARG B:66 , HOH B:2056
BINDING SITE FOR RESIDUE SO4 B 511
13
BC4
SOFTWARE
LYS A:11 , GLY A:15 , ARG A:16 , THR A:18 , TRP A:19 , HIS A:23 , TYR A:52 , GLU A:56 , CYS A:57 , HIS A:60 , PHE A:61 , CYS A:83 , HIS A:86 , ASN A:87 , VAL A:89 , ASN A:90 , LEU A:93 , LYS A:95 , PHE A:98 , ARG A:106 , TRP A:107 , SO4 A:501 , HOH A:1003 , HOH A:1010 , HOH A:1025
BINDING SITE FOR RESIDUE FAD A 1001
14
BC5
SOFTWARE
LYS B:11 , GLY B:15 , ARG B:16 , THR B:18 , TRP B:19 , HIS B:23 , TYR B:52 , GLU B:56 , CYS B:57 , HIS B:60 , PHE B:61 , CYS B:83 , HIS B:86 , ASN B:87 , VAL B:89 , ASN B:90 , LYS B:95 , PHE B:98 , ARG B:106 , TRP B:107 , HOH B:2009 , HOH B:2015 , HOH B:2024
BINDING SITE FOR RESIDUE FAD B 2001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hj3a_ (A:)
1b: SCOP_d2hj3b_ (B:)
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Classes
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(
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Folds
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
FAD-dependent thiol oxidase
(15)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
1a
d2hj3a_
A:
1b
d2hj3b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2hj3A00 (A:8-108)
1b: CATH_2hj3B00 (B:8-107)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.310, no name defined]
(4)
Thale cress (Arabidopsis thaliana)
(1)
1a
2hj3A00
A:8-108
1b
2hj3B00
B:8-107
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (46 KB)
Header - Asym.Unit
Biol.Unit 1 (41 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
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