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Getting 'Exon' information from database.
2HIW
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INACTIVE CONFORMATION ABL KINASE CATALYTIC DOMAIN COMPLEXED WITH TYPE II INHIBITOR
Authors
:
C. Lee
Date
:
29 Jun 06 (Deposition) - 22 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Okram, A. Nagle, F. J. Adrian, C. Lee, P. Ren, X. Wang, T. Sim, Y. Xie, X. Wang, G. Xia, G. Spraggon, M. Warmuth, Y. Liu, N. S. Gray
A General Strategy For Creating
Chem. Biol. V. 13 779 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 7-AMINO-1-METHYL-3-(2-METHYL-5-{[3... (7MPa)
1b: 7-AMINO-1-METHYL-3-(2-METHYL-5-{[3... (7MPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7MP
2
Ligand/Ion
7-AMINO-1-METHYL-3-(2-METHYL-5-{[3-(TRIFLUOROMETHYL)BENZOYL]AMINO}PHENYL)-2-OXO-2,3-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-1-IUM
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:60 , LEU A:266 , TYR A:271 , VAL A:274 , ALA A:287 , LYS A:289 , GLU A:304 , MET A:308 , ILE A:311 , VAL A:317 , ILE A:331 , THR A:333 , GLU A:334 , MET A:336 , HIS A:379 , ALA A:398 , ASP A:399 , PHE A:400
BINDING SITE FOR RESIDUE 7MP A 531
2
AC2
SOFTWARE
HOH B:4 , LEU B:266 , TYR B:271 , VAL B:274 , ALA B:287 , LYS B:289 , GLU B:304 , MET B:308 , ILE B:311 , VAL B:317 , ILE B:331 , THR B:333 , GLU B:334 , MET B:336 , HIS B:379 , LEU B:388 , ALA B:398 , ASP B:399 , PHE B:400
BINDING SITE FOR RESIDUE 7MP B 531
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051693 (K265R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051693
K
247
R
ABL1_HUMAN
Polymorphism
34549764
A/B
K
265
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:266-289,B:266-289)
2: PROTEIN_KINASE_TYR (A:377-389,B:377-389)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ABL1_HUMAN
248-271
2
A:266-289
B:266-289
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
ABL1_HUMAN
359-371
2
A:377-389
B:377-389
[
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]
Exons
(6, 12)
Info
All Exons
Exon 1.5 (A:244-292 | B:244-292)
Exon 1.6 (A:293-321 | B:293-321)
Exon 1.7 (A:321-380 | B:321-380)
Exon 1.8 (A:380-442 | B:380-442)
Exon 1.9 (A:442-493 | B:442-493)
Exon 1.10 (A:493-517 | B:493-517)
View:
Select:
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All Exon Boundaries
1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10
7: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000318560
2a
ENSE00001955789
chr9:
133710453-133710912
460
ABL1_HUMAN
1-27
27
0
-
-
1.3b
ENST00000318560
3b
ENSE00000984287
chr9:
133729451-133729624
174
ABL1_HUMAN
27-85
59
0
-
-
1.4b
ENST00000318560
4b
ENSE00000868149
chr9:
133730188-133730483
296
ABL1_HUMAN
85-183
99
0
-
-
1.5
ENST00000318560
5
ENSE00002065214
chr9:
133738150-133738422
273
ABL1_HUMAN
184-274
91
2
A:244-292
B:244-292
49
49
1.6
ENST00000318560
6
ENSE00001726283
chr9:
133747516-133747600
85
ABL1_HUMAN
275-303
29
2
A:293-321
B:293-321
29
29
1.7
ENST00000318560
7
ENSE00001700841
chr9:
133748247-133748424
178
ABL1_HUMAN
303-362
60
2
A:321-380
B:321-380
60
60
1.8
ENST00000318560
8
ENSE00001758713
chr9:
133750255-133750439
185
ABL1_HUMAN
362-424
63
2
A:380-442
B:380-442
63
63
1.9
ENST00000318560
9
ENSE00001741732
chr9:
133753802-133753954
153
ABL1_HUMAN
424-475
52
2
A:442-493
B:442-493
52
52
1.10
ENST00000318560
10
ENSE00001715343
chr9:
133755455-133755544
90
ABL1_HUMAN
475-505
31
2
A:493-517
B:493-517
25
25
1.11
ENST00000318560
11
ENSE00001781962
chr9:
133755887-133756051
165
ABL1_HUMAN
505-560
56
0
-
-
1.12b
ENST00000318560
12b
ENSE00001457584
chr9:
133759356-133763062
3707
ABL1_HUMAN
560-1130
571
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hiwa_ (A:)
1b: SCOP_d2hiwb_ (B:)
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)
(
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(
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(
)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2hiwa_
A:
1b
d2hiwb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2hiwA01 (A:244-335)
1b: CATH_2hiwB01 (B:244-335)
2a: CATH_2hiwA02 (A:336-517)
2b: CATH_2hiwB02 (B:336-517)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2hiwA01
A:244-335
1b
2hiwB01
B:244-335
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2hiwA02
A:336-517
2b
2hiwB02
B:336-517
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asymmetric Unit 1
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