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2HG8
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYS315ALA MUTANT OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE COMPLEXED WITH ITS SUBSTRATE MIMIC, N-METHYL LEUCINE.
Authors
:
N. H. Yennawar, S. M. Hutson
Date
:
26 Jun 06 (Deposition) - 24 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
D-Aminoacid Aminotransferase-Like Plp-Dependent Enzymes, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. H. Yennawar, M. M. Islam, M. Conway, R. Wallin, S. M. Hutson
Human Mitochondrial Branched Chain Aminotransferase Isozyme Structural Role Of The Cxxc Center In Catalysis.
J. Biol. Chem. V. 281 39660 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: N-METHYLLEUCINE (MLEa)
2b: N-METHYLLEUCINE (MLEb)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
MLE
2
Ligand/Ion
N-METHYLLEUCINE
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:99 , ARG A:192 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , ASN A:242 , GLY A:268 , VAL A:269 , VAL A:270 , THR A:313 , HOH A:2435 , HOH A:2445 , HOH A:2472
BINDING SITE FOR RESIDUE PLP A 400
2
AC2
SOFTWARE
MLE A:2414 , HOH B:6 , HOH B:11 , HOH B:78 , HOH B:83 , ARG B:599 , ARG B:692 , LYS B:702 , TYR B:707 , GLU B:737 , THR B:740 , ASN B:742 , LEU B:766 , GLY B:768 , VAL B:769 , VAL B:770 , GLY B:812 , THR B:813
BINDING SITE FOR RESIDUE PLP B 401
3
AC3
SOFTWARE
GLN A:224 , MET A:241 , ALA A:315
BINDING SITE FOR RESIDUE MLE A 1414
4
AC4
SOFTWARE
TYR A:70 , LEU A:153 , GLY A:154 , VAL A:155 , PLP B:401 , PHE B:530 , PHE B:575 , ARG B:643
BINDING SITE FOR RESIDUE MLE A 2414
5
AC5
SOFTWARE
TYR A:201 , HOH A:2423
BINDING SITE FOR RESIDUE ACY A 1001
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048234 (R659R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048234
T
186
R
BCAT2_HUMAN
Polymorphism
11548193
A
B
R
159
659
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:237-271,B:737-771)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
BCAT2_HUMAN
264-298
2
A:237-271
B:737-771
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.3 (A:3-6 | B:503-506)
Exon 1.4 (A:7-73 | B:507-573)
Exon 1.5 (A:74-110 | B:574-610)
Exon 1.6 (A:111-150 | B:611-650)
Exon 1.7 (A:151-205 (gaps) | B:651-705)
Exon 1.8 (A:205-253 | B:705-753)
Exon 1.9 (A:253-281 | B:753-781)
Exon 1.10 (A:282-328 | B:782-828)
Exon 1.11 (A:329-353 | B:829-853)
Exon 1.12 (A:354-365 | B:854-865)
View:
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Label:
All Exon Boundaries
01: Boundary 1.1a/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000316273
1a
ENSE00001342922
chr19:
49314301-49314241
61
BCAT2_HUMAN
1-8
8
0
-
-
1.3
ENST00000316273
3
ENSE00001609474
chr19:
49310331-49310257
75
BCAT2_HUMAN
9-33
25
2
A:3-6
B:503-506
4
4
1.4
ENST00000316273
4
ENSE00001707807
chr19:
49309974-49309774
201
BCAT2_HUMAN
34-100
67
2
A:7-73
B:507-573
67
67
1.5
ENST00000316273
5
ENSE00000718215
chr19:
49303554-49303444
111
BCAT2_HUMAN
101-137
37
2
A:74-110
B:574-610
37
37
1.6
ENST00000316273
6
ENSE00000718210
chr19:
49303357-49303238
120
BCAT2_HUMAN
138-177
40
2
A:111-150
B:611-650
40
40
1.7
ENST00000316273
7
ENSE00000718205
chr19:
49303095-49302932
164
BCAT2_HUMAN
178-232
55
2
A:151-205 (gaps)
B:651-705
55
55
1.8
ENST00000316273
8
ENSE00000718200
chr19:
49300590-49300448
143
BCAT2_HUMAN
232-280
49
2
A:205-253
B:705-753
49
49
1.9
ENST00000316273
9
ENSE00000718196
chr19:
49300279-49300194
86
BCAT2_HUMAN
280-308
29
2
A:253-281
B:753-781
29
29
1.10
ENST00000316273
10
ENSE00000853352
chr19:
49299975-49299835
141
BCAT2_HUMAN
309-355
47
2
A:282-328
B:782-828
47
47
1.11
ENST00000316273
11
ENSE00000853351
chr19:
49299759-49299685
75
BCAT2_HUMAN
356-380
25
2
A:329-353
B:829-853
25
25
1.12
ENST00000316273
12
ENSE00001236079
chr19:
49298721-49298322
400
BCAT2_HUMAN
381-392
12
2
A:354-365
B:854-865
12
12
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hg8a_ (A:)
1b: SCOP_d2hg8b_ (B:)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(33)
Protein domain
:
Branched-chain aminoacid aminotransferase
(15)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(9)
1a
d2hg8a_
A:
1b
d2hg8b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2hg8A01 (A:3-171,A:351-365)
1b: CATH_2hg8B01 (B:503-674,B:851-865)
2a: CATH_2hg8A02 (A:172-350)
2b: CATH_2hg8B02 (B:675-850)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Human (Homo sapiens)
(15)
1a
2hg8A01
A:3-171,A:351-365
1b
2hg8B01
B:503-674,B:851-865
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Human (Homo sapiens)
(15)
2a
2hg8A02
A:172-350
2b
2hg8B02
B:675-850
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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