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2HG0
Asym. Unit
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Asym.Unit (70 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
STRUCTURE OF THE WEST NILE VIRUS ENVELOPE GLYCOPROTEIN
Authors
:
G. E. Nybakken, C. A. Nelson, B. R. Chen, M. S. Diamond, D. H. Fremont
Date
:
26 Jun 06 (Deposition) - 07 Nov 06 (Release) - 01 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Virus/Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. E. Nybakken, C. A. Nelson, B. R. Chen, M. S. Diamond, D. H. Fremont
Crystal Structure Of The West Nile Virus Envelope Glycoprotein.
J. Virol. V. 80 11467 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: BETA-L-FUCOSE (FULa)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
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No.
Name
Count
Type
Full Name
1
FUL
1
Ligand/Ion
BETA-L-FUCOSE
2
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:154 , NDG A:410 , FUL A:411
BINDING SITE FOR RESIDUE NDG A 409
2
AC2
SOFTWARE
NDG A:409
BINDING SITE FOR RESIDUE NDG A 410
3
AC3
SOFTWARE
GLU A:150 , NDG A:409
BINDING SITE FOR RESIDUE FUL A 411
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2hg0a2 (A:301-400)
2a: SCOP_d2hg0a1 (A:1-300)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
West Nile virus [TaxId: 11082]
(2)
1a
d2hg0a2
A:301-400
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Viral glycoprotein, central and dimerisation domains
(24)
Superfamily
:
Viral glycoprotein, central and dimerisation domains
(24)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
West Nile virus [TaxId: 11082]
(2)
2a
d2hg0a1
A:1-300
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2hg0A02 (A:52-61,A:122-132,A:195-232,A:258-269)
2a: CATH_2hg0A03 (A:62-121,A:233-257)
3a: CATH_2hg0A04 (A:298-400)
4a: CATH_2hg0A01 (A:1-51,A:133-194,A:270-297)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Viral Envelope Glycoprotein; domain 2
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 2
(12)
West nile virus. Organism_taxid: 11082. Strain: ny 1999.
(1)
1a
2hg0A02
A:52-61,A:122-132,A:195-232,A:258-269
Topology
:
Viral Envelope Glycoprotein; domain 3
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 3
(12)
West nile virus. Organism_taxid: 11082. Strain: ny 1999.
(1)
2a
2hg0A03
A:62-121,A:233-257
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.350, no name defined]
(26)
West nile virus. Organism_taxid: 11082. Strain: ny 1999.
(1)
3a
2hg0A04
A:298-400
Topology
:
Tick-borne Encephalitis virus Glycoprotein; domain 1
(14)
Homologous Superfamily
:
Tick-borne Encephalitis virus Glycoprotein, domain 1
(14)
West nile virus. Organism_taxid: 11082. Strain: ny 1999.
(1)
4a
2hg0A01
A:1-51,A:133-194,A:270-297
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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