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2HDJ
Biol. Unit 4
Info
Asym.Unit (127 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (179 KB)
Biol.Unit 4 (123 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN TYPE 3 3ALPHA-HYDROXYSTEROID DEHYDROGENASE IN COMPLEX WITH NADP(H)
Authors
:
F. Faucher, K. Pereira De Jesus-Tran, L. Cantin, V. Luu-The, F. Labrie, R. Breton
Date
:
20 Jun 06 (Deposition) - 05 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: B (3x)
Biol. Unit 4: A (2x)
Keywords
:
Human 3Alphahds3, Aldo-Keto Reductase, Nadph, Akr, Akr1C2, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Faucher, K. Pereira De Jesus-Tran, L. Cantin, V. Luu-The, F. Labrie, R. Breton
Crystal Structures Of Mouse 17Alpha-Hydroxysteroid Dehydrogenase (Apoenzyme And Enzyme-Nadp(H) Binary Complex): Identification Of Molecular Determinants Responsible For The Unique 17Alpha-Reductive Activity Of This Enzyme.
J. Mol. Biol. V. 364 747 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:39 , LYS A:68 , HOH A:805 , HOH A:806 , HOH A:830 , HOH A:874
BINDING SITE FOR RESIDUE SO4 A 401
2
AC3
SOFTWARE
ARG A:96 , ARG B:276 , HOH B:717
BINDING SITE FOR RESIDUE SO4 B 403
3
AC5
SOFTWARE
GLY A:22 , THR A:23 , TYR A:24 , ASP A:50 , TYR A:55 , LYS A:84 , HIS A:117 , SER A:166 , ASN A:167 , GLN A:190 , TYR A:216 , SER A:217 , ALA A:218 , LEU A:219 , GLY A:220 , SER A:221 , HIS A:222 , LEU A:236 , ALA A:253 , ALA A:269 , LYS A:270 , SER A:271 , TYR A:272 , ARG A:276 , GLN A:279 , ASN A:280 , EDO A:604 , HOH A:693 , HOH A:747 , HOH A:772 , HOH A:871
BINDING SITE FOR RESIDUE NDP A 501
4
BC1
SOFTWARE
HIS A:222 , NDP A:501 , HOH A:781 , HOH A:871
BINDING SITE FOR RESIDUE EDO A 604
5
BC2
SOFTWARE
LYS A:123 , ASP A:140 , THR A:141
BINDING SITE FOR RESIDUE EDO A 605
6
BC3
SOFTWARE
GLN A:6 , PRO A:17 , VAL A:18 , LEU A:19 , GLY A:45 , HIS A:47 , PHE A:284
BINDING SITE FOR RESIDUE EDO A 606
[
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_048216 (F46Y, chain A, )
2: VAR_066632 (I79V, chain A, )
3: VAR_066633 (H90Q, chain A, )
4: VAR_014748 (L172Q, chain A, )
5: VAR_066634 (H222Q, chain A, )
6: VAR_066635 (N300T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048216
F
46
Y
AK1C2_HUMAN
Polymorphism
2854482
A
F
46
Y
2
UniProt
VAR_066632
I
79
V
AK1C2_HUMAN
Disease (SRXY8)
---
A
I
79
V
3
UniProt
VAR_066633
H
90
Q
AK1C2_HUMAN
Disease (SRXY8)
---
A
H
90
Q
4
UniProt
VAR_014748
L
172
Q
AK1C2_HUMAN
Polymorphism
11474
A
L
172
Q
5
UniProt
VAR_066634
H
222
Q
AK1C2_HUMAN
Disease (SRXY8)
---
A
H
222
Q
6
UniProt
VAR_066635
N
300
T
AK1C2_HUMAN
Disease (SRXY8)
---
A
N
300
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_2 (A:151-168)
2: ALDOKETO_REDUCTASE_3 (A:268-283)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1C2_HUMAN
151-168
2
A:151-168
-
2
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1C2_HUMAN
268-283
2
A:268-283
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hdja_ (A:)
1b: SCOP_d2hdjb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
3-alpha-hydroxysteroid dehydrogenase
(15)
Human (Homo sapiens), type III [TaxId: 9606]
(12)
1a
d2hdja_
A:
1b
d2hdjb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2hdjA00 (A:2-323)
1b: CATH_2hdjB00 (B:2-323)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2hdjA00
A:2-323
1b
2hdjB00
B:2-323
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Pfam Domains
(0, 0)
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Sorry, no Info available
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (127 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (179 KB)
Header - Biol.Unit 3
Biol.Unit 4 (123 KB)
Header - Biol.Unit 4
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