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Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (19 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST FIBRONECTIN DOMAIN OF HUMAN NCAM1
Authors
:
N. Sekulic, A. Lavie
Date
:
13 Jun 06 (Deposition) - 03 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Fibronectin Type Iii Repeat, Fn1, Ncam, Beta Sandwich, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Mendiratta, N. Sekulic, F. G. Hernandez-Guzman, B. E. Close, A. Lavie, K. J. Colley
A Novel Alpha-Helix In The First Fibronectin Type Iii Repeat Of The Neural Cell Adhesion Molecule Is Critical For N-Glycan Polysialylation.
J. Biol. Chem. V. 281 36052 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
1
Ligand/Ion
SODIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:497 , ASP A:511 , ASP A:542 , GLU A:545
BINDING SITE FOR RESIDUE NA A 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:490-589|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
NCAM1_HUMAN
509-608
611-706
1
A:490-589
-
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Exons
(3, 3)
Info
All Exons
Exon 1.18b (A:486-488)
Exon 1.19b (A:488-545)
Exon 1.20b (A:545-589)
View:
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All Exon Boundaries
1: Boundary 1.17b/1.18b
2: Boundary 1.18b/1.19b
3: Boundary 1.19b/1.20b
4: Boundary 1.20b/1.28c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6
ENST00000316851
6
ENSE00001530989
chr11:
113067915-113067938
24
NCAM1_HUMAN
1-8
8
0
-
-
1.7a
ENST00000316851
7a
ENSE00001530988
chr11:
113073076-113073175
100
NCAM1_HUMAN
9-42
34
0
-
-
1.8a
ENST00000316851
8a
ENSE00001660707
chr11:
113075008-113075226
219
NCAM1_HUMAN
42-115
74
0
-
-
1.9b
ENST00000316851
9b
ENSE00001659816
chr11:
113076245-113076388
144
NCAM1_HUMAN
115-163
49
0
-
-
1.10
ENST00000316851
10
ENSE00001338262
chr11:
113076765-113076902
138
NCAM1_HUMAN
163-209
47
0
-
-
1.11
ENST00000316851
11
ENSE00001338259
chr11:
113077983-113078100
118
NCAM1_HUMAN
209-248
40
0
-
-
1.12
ENST00000316851
12
ENSE00001338256
chr11:
113078555-113078724
170
NCAM1_HUMAN
248-305
58
0
-
-
1.13
ENST00000316851
13
ENSE00000989824
chr11:
113085091-113085233
143
NCAM1_HUMAN
305-352
48
0
-
-
1.14a
ENST00000316851
14a
ENSE00002168218
chr11:
113092018-113092047
30
NCAM1_HUMAN
353-362
10
0
-
-
1.16b
ENST00000316851
16b
ENSE00001725196
chr11:
113102367-113102517
151
NCAM1_HUMAN
363-413
51
0
-
-
1.17b
ENST00000316851
17b
ENSE00001701392
chr11:
113102892-113103076
185
NCAM1_HUMAN
413-474
62
0
-
-
1.18b
ENST00000316851
18b
ENSE00001742465
chr11:
113103440-113103536
97
NCAM1_HUMAN
475-507
33
1
A:486-488
3
1.19b
ENST00000316851
19b
ENSE00001680751
chr11:
113103869-113104039
171
NCAM1_HUMAN
507-564
58
1
A:488-545
58
1.20b
ENST00000316851
20b
ENSE00001127020
chr11:
113105755-113105890
136
NCAM1_HUMAN
564-609
46
1
A:545-589
45
1.28c
ENST00000316851
28c
ENSE00001127014
chr11:
113126600-113126723
124
NCAM1_HUMAN
609-650
42
0
-
-
1.29e
ENST00000316851
29e
ENSE00001795910
chr11:
113130868-113131045
178
NCAM1_HUMAN
651-710
60
0
-
-
1.31c
ENST00000316851
31c
ENSE00001723448
chr11:
113140910-113141117
208
NCAM1_HUMAN
710-779
70
0
-
-
1.32
ENST00000316851
32
ENSE00001694365
chr11:
113142482-113142598
117
NCAM1_HUMAN
779-818
40
0
-
-
1.34h
ENST00000316851
34h
ENSE00001382162
chr11:
113145989-113149133
3145
NCAM1_HUMAN
818-857
40
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2haza1 (A:489-589)
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Classes
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)
(
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Neural cell adhesion molecule 1, NCAM
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2haza1
A:489-589
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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