PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2HA4
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (179 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MUTANT S203A OF MOUSE ACETYLCHOLINESTERASE COMPLEXED WITH ACETYLCHOLINE
Authors
:
Y. Bourne, Z. Radic, G. Sulzenbacher, E. Kim, P. Taylor, P. Marchot
Date
:
12 Jun 06 (Deposition) - 18 Jul 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase Fold, Serine Esterase, Acetylcholinesterase, Mutant, Homodimer, Glycosylated Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, Z. Radic, G. Sulzenbacher, E. Kim, P. Taylor, P. Marchot
Substrate And Product Trafficking Through The Active Center Gorge Of Acetylcholinesterase Analyzed By Crystallography And Equilibrium Binding
J. Biol. Chem. V. 281 29256 2006
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: ACETYLCHOLINE (ACHa)
1b: ACETYLCHOLINE (ACHb)
1c: ACETYLCHOLINE (ACHc)
1d: ACETYLCHOLINE (ACHd)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
3a: HEXAETHYLENE GLYCOL (P6Ga)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACH
4
Ligand/Ion
ACETYLCHOLINE
2
ACT
2
Ligand/Ion
ACETATE ION
3
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:121 , GLY A:122 , ALA A:203 , ALA A:204 , PHE A:295 , PHE A:297 , HIS A:447 , ACH A:546
BINDING SITE FOR RESIDUE ACT A 544
2
AC2
SOFTWARE
GLY B:121 , GLY B:122 , ALA B:203 , ALA B:204 , PHE B:295 , PHE B:297 , HIS B:447 , ACH B:603
BINDING SITE FOR RESIDUE ACT B 601
3
AC3
SOFTWARE
TYR A:72 , TYR A:124 , TRP A:286 , PHE A:297 , TYR A:341 , HOH A:1939
BINDING SITE FOR RESIDUE ACH A 545
4
AC4
SOFTWARE
TRP A:86 , TYR A:124 , GLU A:202 , TYR A:337 , PHE A:338 , ACT A:544 , HOH A:1907
BINDING SITE FOR RESIDUE ACH A 546
5
AC5
SOFTWARE
TYR B:72 , TYR B:124 , TRP B:286 , PHE B:297 , PHE B:338 , TYR B:341 , ACH B:603
BINDING SITE FOR RESIDUE ACH B 602
6
AC6
SOFTWARE
TRP B:86 , TYR B:124 , TYR B:133 , GLU B:202 , TYR B:337 , ACT B:601 , ACH B:602
BINDING SITE FOR RESIDUE ACH B 603
7
AC7
SOFTWARE
LEU A:380 , HIS A:381 , GLN A:527 , PHE A:535 , HOH A:1973 , LEU B:380 , HIS B:381 , PHE B:535
BINDING SITE FOR RESIDUE P6G A 1901
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:94-104,B:94-104)
2: CARBOXYLESTERASE_B_1 (A:190-205,B:190-205)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
ACES_MOUSE
125-135
2
A:94-104
B:94-104
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
ACES_MOUSE
221-236
2
A:190-205
B:190-205
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ha4a_ (A:)
1b: SCOP_d2ha4b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
automated matches
(91)
Mouse (Mus musculus) [TaxId: 10090]
(51)
1a
d2ha4a_
A:
1b
d2ha4b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ha4B00 (B:4-543)
1b: CATH_2ha4A00 (A:1-543)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
House mouse (Mus musculus)
(27)
1a
2ha4B00
B:4-543
1b
2ha4A00
A:1-543
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (185 KB)
Header - Asym.Unit
Biol.Unit 1 (179 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2HA4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help