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2H79
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TR ALPHA BOUND T3 IN ORTHORHOMBIC SPACE GROUP
Authors
:
A. S. Nascimento, S. M. G. Dias, F. M. Nunes, R. Aparicio, L. Bleicher, A. L. B. Ambrosio, A. C. M. Figueira, M. A. M. Santos, M. O. Neto, H. Fischer, H. F. M Togashi, A. F. Craievich, R. C. Garrat, J. D. Baxter P. Webb, I. Polikarpov
Date
:
01 Jun 06 (Deposition) - 25 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tr Alpha, Tr, T3, Hormone/Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Nascimento, S. M. G. Dias, F. M. Nunes, R. Aparicio, A. L. B. Ambrosio, L. Bleicher, A. C. M. Figueira, M. A. M. Santos, M. O. Neto, H. Fischer, M. Togashi, A. F. Craievich, R. C. Garratt, J. D. Baxter, P. Webb, I. Polikarpov
Structural Rearrangements In The Thyroid Hormone Receptor Hinge Domain And Their Putative Role In The Receptor Function.
J. Mol. Biol. V. 360 586 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
1b: S-(DIMETHYLARSENIC)CYSTEINE (CASb)
1c: S-(DIMETHYLARSENIC)CYSTEINE (CASc)
1d: S-(DIMETHYLARSENIC)CYSTEINE (CASd)
1e: S-(DIMETHYLARSENIC)CYSTEINE (CASe)
2a: 3,5,3'TRIIODOTHYRONINE (T3a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAS
5
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
2
T3
1
Ligand/Ion
3,5,3'TRIIODOTHYRONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:218 , ILE A:222 , ALA A:225 , ARG A:228 , MET A:259 , ARG A:262 , THR A:275 , LEU A:276 , SER A:277 , GLY A:290 , LEU A:292 , ILE A:299 , HIS A:381 , CAS A:388 , PHE A:401 , HOH A:417 , HOH A:435 , HOH A:471
BINDING SITE FOR RESIDUE T3 A 1
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_074559 (A263V, chain A, )
2: VAR_074560 (N359Y, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_074559
A
263
V
THA_HUMAN
Disease (CHNG6)
---
A
A
263
V
2
UniProt
VAR_074560
N
359
Y
THA_HUMAN
Disease (CHNG6)
---
A
N
359
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.5 (A:142-147)
Exon 1.6 (A:148-192)
Exon 1.7 (A:193-241)
Exon 1.8 (A:242-328)
Exon 1.9a (A:328-370)
Exon 1.10b (A:371-384 (gaps))
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9a
6: Boundary 1.9a/1.10b
7: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000394121
1c
ENSE00001423488
chr17:
38219160-38219345
186
THA_HUMAN
-
0
0
-
-
1.2
ENST00000394121
2
ENSE00001254896
chr17:
38230445-38230794
350
THA_HUMAN
1-18
18
0
-
-
1.3
ENST00000394121
3
ENSE00001182493
chr17:
38233124-38233191
68
THA_HUMAN
18-41
24
0
-
-
1.4
ENST00000394121
4
ENSE00001602007
chr17:
38233761-38233861
101
THA_HUMAN
41-74
34
0
-
-
1.5
ENST00000394121
5
ENSE00001302538
chr17:
38240088-38240235
148
THA_HUMAN
75-124
50
1
A:142-147
6
1.6
ENST00000394121
6
ENSE00001120400
chr17:
38240863-38241068
206
THA_HUMAN
124-192
69
1
A:148-192
45
1.7
ENST00000394121
7
ENSE00000863335
chr17:
38242960-38243106
147
THA_HUMAN
193-241
49
1
A:193-241
49
1.8
ENST00000394121
8
ENSE00001748430
chr17:
38244495-38244753
259
THA_HUMAN
242-328
87
1
A:242-328
87
1.9a
ENST00000394121
9a
ENSE00000863337
chr17:
38245459-38245586
128
THA_HUMAN
328-370
43
1
A:328-370
43
1.10b
ENST00000394121
10b
ENSE00001778686
chr17:
38249390-38249635
246
THA_HUMAN
371-451
81
1
A:371-384 (gaps)
81
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2h79a_ (A:)
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Protein Domains
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d2h79a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2h79A00 (A:142-408)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2h79A00
A:142-408
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (63 KB)
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Header - Biol.Unit 1
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