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2H64
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TERNARY LIGAND-RECEPTOR COMPLEX OF BMP-2
Authors
:
T. D. Mueller, W. Sebald, D. Weber
Date
:
30 May 06 (Deposition) - 10 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Tgf-Beta Superfamily, Ligand-Receptor Complex, Hormone/Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Weber, A. Kotzsch, J. Nickel, S. Harth, A. Seher, U. Mueller, W. Sebald, T. D. Mueller
A Silent H-Bond Can Be Mutationally Activated For High-Affinity Interaction Of Bmp-2 And Activin Type Iib Receptor.
Bmc Struct. Biol. V. 7 6 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041398 (F35Y, chain B, )
2: VAR_022828 (Y39D, chain B, )
3: VAR_022829 (C59Y, chain B, )
4: VAR_015533 (C101R, chain B, )
5: VAR_052570 (D105G, chain A, )
6: VAR_022830 (C107R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041398
F
58
Y
BMR1A_HUMAN
Unclassified
---
B
F
35
Y
2
UniProt
VAR_022828
Y
62
D
BMR1A_HUMAN
Disease (JPS)
---
B
Y
39
D
3
UniProt
VAR_022829
C
82
Y
BMR1A_HUMAN
Disease (JPS)
---
B
C
59
Y
4
UniProt
VAR_015533
C
124
R
BMR1A_HUMAN
Disease (JPS)
---
B
C
101
R
5
UniProt
VAR_052570
D
387
G
BMP2_HUMAN
Polymorphism
11545591
A
D
105
G
6
UniProt
VAR_022830
C
130
R
BMR1A_HUMAN
Disease (JPS)
---
B
C
107
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TGF_BETA_1 (A:32-47)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TGF_BETA_1
PS00250
TGF-beta family signature.
BMP2_HUMAN
314-329
1
A:32-47
[
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Exons
(5, 5)
Info
All Exons
Exon 1.5c (B:32-54)
Exon 1.6 (B:54-88)
Exon 1.7 (B:89-121)
Exon 1.8 (B:121-123)
Exon 2.3 (A:10-114)
View:
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All Exon Boundaries
1: Boundary 1.4a/1.5c
2: Boundary 1.5c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 2.2/2.3
7: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000372037
1b
ENSE00001456788
chr10:
88516407-88516676
270
BMR1A_HUMAN
-
0
0
-
-
1.2a
ENST00000372037
2a
ENSE00001456787
chr10:
88598622-88598736
115
BMR1A_HUMAN
-
0
0
-
-
1.4a
ENST00000372037
4a
ENSE00001456785
chr10:
88635616-88635842
227
BMR1A_HUMAN
1-23
23
0
-
-
1.5c
ENST00000372037
5c
ENSE00000711713
chr10:
88649819-88649981
163
BMR1A_HUMAN
23-77
55
1
B:32-54
23
1.6
ENST00000372037
6
ENSE00000711717
chr10:
88651884-88651986
103
BMR1A_HUMAN
77-111
35
1
B:54-88
35
1.7
ENST00000372037
7
ENSE00000711722
chr10:
88659551-88659647
97
BMR1A_HUMAN
112-144
33
1
B:89-121
33
1.8
ENST00000372037
8
ENSE00000711728
chr10:
88659784-88659883
100
BMR1A_HUMAN
144-177
34
1
B:121-123
3
1.9
ENST00000372037
9
ENSE00000711732
chr10:
88671997-88672141
145
BMR1A_HUMAN
177-225
49
0
-
-
1.10a
ENST00000372037
10a
ENSE00000711737
chr10:
88676891-88677083
193
BMR1A_HUMAN
226-290
65
0
-
-
1.11b
ENST00000372037
11b
ENSE00000711742
chr10:
88678929-88679226
298
BMR1A_HUMAN
290-389
100
0
-
-
1.12
ENST00000372037
12
ENSE00001646386
chr10:
88681277-88681452
176
BMR1A_HUMAN
389-448
60
0
-
-
1.13
ENST00000372037
13
ENSE00000830582
chr10:
88683133-88683263
131
BMR1A_HUMAN
448-491
44
0
-
-
1.14b
ENST00000372037
14b
ENSE00001456760
chr10:
88683351-88684945
1595
BMR1A_HUMAN
492-532
41
0
-
-
2.1
ENST00000378827
1
ENSE00001478949
chr20:
6748311-6749522
1212
BMP2_HUMAN
-
0
0
-
-
2.2
ENST00000378827
2
ENSE00001478945
chr20:
6750767-6751119
353
BMP2_HUMAN
1-116
116
0
-
-
2.3
ENST00000378827
3
ENSE00001478936
chr20:
6758892-6760910
2019
BMP2_HUMAN
116-396
281
1
A:10-114
105
[
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2h64a1 (A:10-114)
2a: SCOP_d2h64b_ (B:)
3a: SCOP_d2h64c_ (C:)
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Classes
(
)
(
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Folds
(
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Superfamilies
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(
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Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Transforming growth factor (TGF)-beta
(41)
Protein domain
:
Bone morphogenetic protein-2 (BMP-2)
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2h64a1
A:10-114
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Extracellular domain of cell surface receptors
(39)
Protein domain
:
BMP receptor Ia ectodomain
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
2a
d2h64b_
B:
Protein domain
:
Type II activin receptor
(7)
Mouse (Mus musculus), isoform IIB [TaxId: 10090]
(2)
3a
d2h64c_
C:
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2h64B00 (B:32-123)
1b: CATH_2h64C00 (C:6-99)
2a: CATH_2h64A00 (A:10-114)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
1a
2h64B00
B:32-123
1b
2h64C00
C:6-99
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
2a
2h64A00
A:10-114
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
(currently selected atoms:
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Nucleic
Backbone
Sidechain
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Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
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Asym.Unit (58 KB)
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