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2H61
Asym. Unit
Info
Asym.Unit (144 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN CA2+-LOADED S100B
Authors
:
T. Ostendorp, C. W. Heizmann, P. M. H. Kroneck, G. Fritz
Date
:
30 May 06 (Deposition) - 05 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
S100, Ef-Hand, Calcium-Binding, Rage, Metal Binding Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ostendorp, E. Leclerc, A. Galichet, M. Koch, N. Demling, B. Weigle, C. W. Heizmann, P. M. Kroneck, G. Fritz
Structural And Functional Insights Into Rage Activation By Multimeric S100B.
Embo J. V. 26 3868 2007
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
2a: N-FORMYLMETHIONINE (FMEa)
2b: N-FORMYLMETHIONINE (FMEb)
2c: N-FORMYLMETHIONINE (FMEc)
3a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
18
Ligand/Ion
CALCIUM ION
2
FME
3
Mod. Amino Acid
N-FORMYLMETHIONINE
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:18 , GLU A:21 , ASP A:23 , LYS A:26 , GLU A:31 , HOH A:804
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
ASP A:61 , ASP A:63 , ASP A:65 , GLU A:67 , GLU A:72 , HOH A:805
BINDING SITE FOR RESIDUE CA A 802
03
AC3
SOFTWARE
SER B:18 , GLU B:21 , ASP B:23 , LYS B:26 , GLU B:31 , HOH B:807
BINDING SITE FOR RESIDUE CA B 803
04
AC4
SOFTWARE
ASP B:61 , ASP B:63 , ASP B:65 , GLU B:67 , GLU B:72 , HOH B:839
BINDING SITE FOR RESIDUE CA B 804
05
AC5
SOFTWARE
SER C:18 , GLU C:21 , ASP C:23 , LYS C:26 , GLU C:31 , HOH C:812
BINDING SITE FOR RESIDUE CA C 805
06
AC6
SOFTWARE
ASP C:61 , ASP C:63 , ASP C:65 , GLU C:67 , GLU C:72 , HOH C:809
BINDING SITE FOR RESIDUE CA C 806
07
AC7
SOFTWARE
SER D:18 , GLU D:21 , ASP D:23 , LYS D:26 , GLU D:31 , HOH D:820
BINDING SITE FOR RESIDUE CA D 807
08
AC8
SOFTWARE
ASP D:61 , ASP D:63 , ASP D:65 , GLU D:67 , GLU D:72 , HOH D:821
BINDING SITE FOR RESIDUE CA D 808
09
AC9
SOFTWARE
ASP D:12 , HOH D:822 , HOH D:823 , SER E:41 , LEU E:44 , HOH E:904
BINDING SITE FOR RESIDUE CA D 817
10
BC1
SOFTWARE
SER E:18 , GLU E:21 , ASP E:23 , LYS E:26 , GLU E:31 , HOH E:902
BINDING SITE FOR RESIDUE CA E 809
11
BC2
SOFTWARE
ASP E:61 , ASP E:63 , ASP E:65 , GLU E:67 , GLU E:72 , HOH E:903
BINDING SITE FOR RESIDUE CA E 810
12
BC3
SOFTWARE
SER F:18 , GLU F:21 , ASP F:23 , LYS F:26 , GLU F:31 , HOH F:814
BINDING SITE FOR RESIDUE CA F 811
13
BC4
SOFTWARE
ASP F:61 , ASP F:63 , ASP F:65 , GLU F:67 , GLU F:72 , HOH F:874
BINDING SITE FOR RESIDUE CA F 812
14
BC5
SOFTWARE
SER G:18 , GLU G:21 , ASP G:23 , LYS G:26 , GLU G:31 , HOH G:851
BINDING SITE FOR RESIDUE CA G 813
15
BC6
SOFTWARE
ASP G:61 , ASP G:63 , ASP G:65 , GLU G:67 , GLU G:72 , HOH G:820
BINDING SITE FOR RESIDUE CA G 814
16
BC7
SOFTWARE
SER B:41 , HOH B:805 , HOH B:806 , ASP G:12 , HOH G:819
BINDING SITE FOR RESIDUE CA G 818
17
BC8
SOFTWARE
SER H:18 , GLU H:21 , ASP H:23 , LYS H:26 , GLU H:31 , HOH H:820
BINDING SITE FOR RESIDUE CA H 815
18
BC9
SOFTWARE
ASP H:61 , ASP H:63 , ASP H:65 , GLU H:67 , GLU H:72 , HOH H:818
BINDING SITE FOR RESIDUE CA H 816
19
CC1
SOFTWARE
PHE C:88 , ILE D:11 , ASP D:12 , HIS D:15 , HIS E:42 , PHE E:43 , ALA E:83 , PHE E:87 , HOH E:964
BINDING SITE FOR RESIDUE PG4 E 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 24)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:48-83,B:48-83,C:48-83,D:48-83,E:...)
2: S100_CABP (A:56-77,B:56-77,C:56-77,D:56-77,E:...)
3: EF_HAND_1 (A:61-73,B:61-73,C:61-73,D:61-73,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S100B_HUMAN
49-84
8
A:48-83
B:48-83
C:48-83
D:48-83
E:48-83
F:48-83
G:48-83
H:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S100B_HUMAN
57-78
8
A:56-77
B:56-77
C:56-77
D:56-77
E:56-77
F:56-77
G:56-77
H:56-77
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S100B_HUMAN
62-74
8
A:61-73
B:61-73
C:61-73
D:61-73
E:61-73
F:61-73
G:61-73
H:61-73
[
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Exons
(2, 16)
Info
All Exons
Exon 1.2a (A:0-45 | B:0-45 | C:0-45 | D:0-45 ...)
Exon 1.4a (A:46-90 | B:46-91 | C:46-90 | D:46...)
View:
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.4a
3: Boundary 1.4a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000397648
2a
ENSE00001529559
chr21:
48022806-48022191
616
S100B_HUMAN
1-46
46
8
A:0-45
B:0-45
C:0-45
D:0-45
E:0-45
F:0-45
G:0-45
H:0-45
46
46
46
46
46
46
46
46
1.4a
ENST00000397648
4a
ENSE00001529558
chr21:
48019416-48019194
223
S100B_HUMAN
47-92
46
8
A:46-90
B:46-91
C:46-90
D:46-90
E:46-90
F:46-90
G:46-90
H:46-89
45
46
45
45
45
45
45
44
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2h61a_ (A:)
1b: SCOP_d2h61b_ (B:)
1c: SCOP_d2h61c_ (C:)
1d: SCOP_d2h61d_ (D:)
1e: SCOP_d2h61e_ (E:)
1f: SCOP_d2h61f_ (F:)
1g: SCOP_d2h61g_ (G:)
1h: SCOP_d2h61h_ (H:)
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Classes
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(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d2h61a_
A:
1b
d2h61b_
B:
1c
d2h61c_
C:
1d
d2h61d_
D:
1e
d2h61e_
E:
1f
d2h61f_
F:
1g
d2h61g_
G:
1h
d2h61h_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2h61B00 (B:0-91)
1b: CATH_2h61A00 (A:0-90)
1c: CATH_2h61E00 (E:0-90)
1d: CATH_2h61F00 (F:0-90)
1e: CATH_2h61H00 (H:0-89)
1f: CATH_2h61C00 (C:1-90)
1g: CATH_2h61D00 (D:1-90)
1h: CATH_2h61G00 (G:1-90)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
2h61B00
B:0-91
1b
2h61A00
A:0-90
1c
2h61E00
E:0-90
1d
2h61F00
F:0-90
1e
2h61H00
H:0-89
1f
2h61C00
C:1-90
1g
2h61D00
D:1-90
1h
2h61G00
G:1-90
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain E
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Chain H
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Asym.Unit (144 KB)
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