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2H5U
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM CERRENA MAXIMA AT 1.9A RESOLUTION
Authors
:
A. V. Lyashenko, A. G. Gabdoulkhakov, V. N. Zaitsev, V. S. Lamzin, P. F. L I. Bento, C. Betzel, N. E. Zhukhlistova, Y. N. Zhukova, A. M. Mikhailov
Date
:
27 May 06 (Deposition) - 29 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Blue Multi-Copper Enzyme, Laccase From Cerrena Maxima, Purification, Crystals, X-Ray Analyses, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. V. Lyashenko, N. E. Zhukhlistova, A. G. Gabdoulkhakov, V. N. Zaitsev, I. Bento, V. S. Lamzin, C. Betzel, P. F. Lindley, O. V. Koroleva, Y. N. Zhukova, E. V. Stepanova, E. Y. Morgunova, W. Voelter, K. Schirwitz, V. I. Tishkov, G. S. Kachalova, E. A. Cherkashyn, A. M. Mikhailov
Purification, Crystallization And Preliminary X-Ray Study O The Fungal Laccase From Cerrena Maxima
Acta Crystallogr. , Sect. F V. 62 954 2006
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4a: META-NITRO-TYROSINE (NIYa)
4b: META-NITRO-TYROSINE (NIYb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
4
Ligand/Ion
COPPER (II) ION
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NIY
2
Mod. Amino Acid
META-NITRO-TYROSINE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:23 , ASN A:54 , MET A:57 , ALA A:155 , LEU A:158 , NAG A:501 , HOH A:1029 , HOH A:1035 , HOH A:1102
BINDING SITE FOR RESIDUE NAG A 500
02
AC2
SOFTWARE
ARG A:22 , HIS A:153 , THR A:154 , ALA A:155 , LEU A:158 , NAG A:500 , MAN A:502 , HOH A:662 , HOH A:670 , HOH A:920 , HOH A:1033 , HOH A:1035
BINDING SITE FOR RESIDUE NAG A 501
03
AC3
SOFTWARE
PHE A:20 , NAG A:501 , MAN A:503 , HOH A:978 , HOH A:1033 , HOH A:1075 , HOH A:1114
BINDING SITE FOR RESIDUE MAN A 502
04
AC4
SOFTWARE
PRO A:4 , VAL A:5 , PHE A:20 , SER A:21 , MAN A:502 , MAN A:504 , HOH A:821 , HOH A:893 , HOH A:1047 , HOH A:1113
BINDING SITE FOR RESIDUE MAN A 503
05
AC5
SOFTWARE
PRO A:4 , ALA A:14 , SER A:21 , ASN A:39 , ASP A:42 , MAN A:503 , HOH A:662 , HOH A:680 , HOH A:860 , HOH A:901 , HOH A:1033
BINDING SITE FOR RESIDUE MAN A 504
06
AC6
SOFTWARE
PRO A:160 , GLY A:215 , ASN A:217 , GLN A:252 , GLN A:298 , NAG A:506 , HOH A:709 , HOH A:909 , HOH A:1121
BINDING SITE FOR RESIDUE NAG A 505
07
AC7
SOFTWARE
LYS A:157 , LEU A:158 , GLY A:159 , NAG A:505 , MAN A:507 , HOH A:984
BINDING SITE FOR RESIDUE NAG A 506
08
AC8
SOFTWARE
LYS A:157 , NAG A:506 , HOH A:984
BINDING SITE FOR RESIDUE MAN A 507
09
AC9
SOFTWARE
ASN A:333 , SER A:335 , ASN A:336 , PHE A:338
BINDING SITE FOR RESIDUE NAG A 508
10
BC1
SOFTWARE
ASN A:327 , SER A:383 , PRO A:385 , ASN A:436 , GLN A:482 , HOH A:839 , HOH A:986 , HOH A:991 , HOH A:1052 , HOH A:1107
BINDING SITE FOR RESIDUE NAG A 509
11
BC2
SOFTWARE
HIS A:395 , CYS A:453 , ILE A:455 , HIS A:458
BINDING SITE FOR RESIDUE CU A 601
12
BC3
SOFTWARE
HIS A:66 , TRP A:107 , HIS A:109 , HIS A:454 , HOH A:1132
BINDING SITE FOR RESIDUE CU A 602
13
BC4
SOFTWARE
HIS A:111 , HIS A:400 , HIS A:452 , HOH A:1132
BINDING SITE FOR RESIDUE CU A 603
14
BC5
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:398 , HIS A:400 , HOH A:607
BINDING SITE FOR RESIDUE CU A 604
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:104-124)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_TRAMX
104-124
1
A:104-124
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2h5ua1 (A:1-130)
1b: SCOP_d2h5ua2 (A:131-300)
1c: SCOP_d2h5ua3 (A:301-499)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Trametes maxima [TaxId: 259368]
(1)
1a
d2h5ua1
A:1-130
1b
d2h5ua2
A:131-300
1c
d2h5ua3
A:301-499
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2h5uA01 (A:1-132)
1b: CATH_2h5uA02 (A:133-309)
1c: CATH_2h5uA03 (A:310-499)
View:
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Classes
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Trametes maxima. Organism_taxid: 259368. Strain: 0275 (mont)kraisel ofthe polyporaceae family
(1)
1a
2h5uA01
A:1-132
1b
2h5uA02
A:133-309
1c
2h5uA03
A:310-499
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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