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2H5G
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PYRROLINE-5-CARBOXYLATE SYNTHETASE
Authors
:
E. Papagrigoriou, N. Shafqat, A. P. Turnbull, G. Berridge, V. Hozjan, K. Kavanagh, O. Gileadi, C. Smee, J. Bray, F. Gorrec, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann, Structural Gen Consortium (Sgc)
Date
:
26 May 06 (Deposition) - 23 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (1x)
Biol. Unit 3: B (2x)
Keywords
:
Dehydrogenase, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Papagrigoriou, N. Shafqat, A. P. Turnbull, G. Berridge, V. Hozjan, K. Kavanagh, O. Gileadi, C. Smee, J. Bray, F. Gorrec, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Crystal Structure Of Human Pyrroline-5-Carboxylate Synthetase
To Be Published
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:122 , HOH A:125 , HOH A:152 , HOH A:262 , ARG A:483 , ARG A:558 , HIS A:579 , CYS A:612
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
HOH A:135 , TYR A:608 , ARG A:726 , ARG A:732
BINDING SITE FOR RESIDUE SO4 A 302
3
AC3
SOFTWARE
HOH B:13 , HOH B:70 , HOH B:119 , HOH B:274 , ARG B:425 , ARG B:483 , ARG B:558 , HIS B:579 , CYS B:612
BINDING SITE FOR RESIDUE SO4 B 303
4
AC4
SOFTWARE
TYR B:608 , ARG B:726 , ARG B:732
BINDING SITE FOR RESIDUE SO4 B 304
5
AC5
SOFTWARE
ARG A:599
BINDING SITE FOR RESIDUE SO4 A 305
6
AC6
SOFTWARE
HOH B:91 , ARG B:599 , ARG B:602
BINDING SITE FOR RESIDUE SO4 B 306
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051793 (S372Y, chain A/B, )
2: VAR_058006 (H784Y, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051793
S
372
Y
P5CS_HUMAN
Polymorphism
3765571
A/B
S
372
Y
2
UniProt
VAR_058006
H
784
Y
P5CS_HUMAN
Disease (ARCL3A)
---
A/B
H
784
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PROA (A:678-699,B:678-699)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROA
PS01223
Gamma-glutamyl phosphate reductase signature.
P5CS_HUMAN
678-699
2
A:678-699
B:678-699
[
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Exons
(9, 18)
Info
All Exons
Exon 1.11 (A:361-384 | B:362-384)
Exon 1.12b (A:385-416 | B:385-416)
Exon 1.13 (A:416-489 | B:416-489)
Exon 1.14b (A:490-535 | B:490-535)
Exon 1.15 (A:536-601 (gaps) | B:536-601 (gaps...)
Exon 1.16 (A:601-641 | B:601-641)
Exon 1.17 (A:642-704 (gaps) | B:642-704 (gaps...)
Exon 1.18 (A:704-736 | B:704-736)
Exon 1.19b (A:736-793 | B:736-794)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.10/1.11
02: Boundary 1.11/1.12b
03: Boundary 1.12b/1.13
04: Boundary 1.13/1.14b
05: Boundary 1.14b/1.15
06: Boundary 1.15/1.16
07: Boundary 1.16/1.17
08: Boundary 1.17/1.18
09: Boundary 1.18/1.19b
10: Boundary 1.19b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000371224
1a
ENSE00001454681
chr10:
97416463-97416354
110
P5CS_HUMAN
-
0
0
-
-
1.2
ENST00000371224
2
ENSE00002180746
chr10:
97413162-97413047
116
P5CS_HUMAN
1-30
30
0
-
-
1.3
ENST00000371224
3
ENSE00000716974
chr10:
97402963-97402749
215
P5CS_HUMAN
30-101
72
0
-
-
1.4
ENST00000371224
4
ENSE00000503435
chr10:
97397193-97397044
150
P5CS_HUMAN
102-151
50
0
-
-
1.5
ENST00000371224
5
ENSE00000716969
chr10:
97396954-97396850
105
P5CS_HUMAN
152-186
35
0
-
-
1.6b
ENST00000371224
6b
ENSE00000716959
chr10:
97393406-97393248
159
P5CS_HUMAN
187-239
53
0
-
-
1.7
ENST00000371224
7
ENSE00000987352
chr10:
97392806-97392716
91
P5CS_HUMAN
240-270
31
0
-
-
1.9
ENST00000371224
9
ENSE00000716957
chr10:
97388249-97388125
125
P5CS_HUMAN
270-311
42
0
-
-
1.10
ENST00000371224
10
ENSE00000716953
chr10:
97387343-97387199
145
P5CS_HUMAN
312-360
49
0
-
-
1.11
ENST00000371224
11
ENSE00000503441
chr10:
97386533-97386460
74
P5CS_HUMAN
360-384
25
2
A:361-384
B:362-384
24
23
1.12b
ENST00000371224
12b
ENSE00000716950
chr10:
97385212-97385119
94
P5CS_HUMAN
385-416
32
2
A:385-416
B:385-416
32
32
1.13
ENST00000371224
13
ENSE00000987353
chr10:
97381008-97380788
221
P5CS_HUMAN
416-489
74
2
A:416-489
B:416-489
74
74
1.14b
ENST00000371224
14b
ENSE00000987354
chr10:
97376371-97376234
138
P5CS_HUMAN
490-535
46
2
A:490-535
B:490-535
46
46
1.15
ENST00000371224
15
ENSE00000987355
chr10:
97373918-97373723
196
P5CS_HUMAN
536-601
66
2
A:536-601 (gaps)
B:536-601 (gaps)
66
66
1.16
ENST00000371224
16
ENSE00000987356
chr10:
97373620-97373499
122
P5CS_HUMAN
601-641
41
2
A:601-641
B:601-641
41
41
1.17
ENST00000371224
17
ENSE00000987357
chr10:
97371199-97371013
187
P5CS_HUMAN
642-704
63
2
A:642-704 (gaps)
B:642-704 (gaps)
63
63
1.18
ENST00000371224
18
ENSE00000987358
chr10:
97370049-97369954
96
P5CS_HUMAN
704-736
33
2
A:704-736
B:704-736
33
33
1.19b
ENST00000371224
19b
ENSE00001843244
chr10:
97366700-97365696
1005
P5CS_HUMAN
736-795
60
2
A:736-793
B:736-794
58
59
[
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SCOP Domains
(0, 0)
Info
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View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Asym.Unit (145 KB)
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