PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2H58
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE KIFC3 MOTOR DOMAIN IN COMPLEX WITH ADP
Authors
:
J. Wang, Y. Shen, W. Tempel, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
25 May 06 (Deposition) - 27 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinesin, Motor Domain, Adp, Structural Genomics, Structur Al Genomics Consortium, Sgc, Structural Genomics Consortium, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, Y. Shen, W. Tempel, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 13)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
UNX
11
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:153 , HOH A:168 , HOH A:169 , HOH A:172 , THR A:535 , ADP A:901
BINDING SITE FOR RESIDUE MG A 801
02
AC2
SOFTWARE
HOH A:29 , HOH A:121 , HOH A:153 , HOH A:172 , HOH A:175 , ARG A:451 , ARG A:453 , PRO A:454 , THR A:456 , GLN A:529 , THR A:530 , GLY A:531 , ALA A:532 , GLY A:533 , LYS A:534 , THR A:535 , TYR A:536 , MG A:801
BINDING SITE FOR RESIDUE ADP A 901
03
AC3
SOFTWARE
GLU A:595 , ILE A:596
BINDING SITE FOR RESIDUE UNX A 401
04
AC4
SOFTWARE
MET A:538 , ASN A:548
BINDING SITE FOR RESIDUE UNX A 402
05
AC5
SOFTWARE
GLU A:613 , ASN A:639
BINDING SITE FOR RESIDUE UNX A 403
06
AC6
SOFTWARE
HOH A:89 , SER A:644 , SER A:645
BINDING SITE FOR RESIDUE UNX A 404
07
AC7
SOFTWARE
VAL A:608 , LEU A:611
BINDING SITE FOR RESIDUE UNX A 405
08
AC8
SOFTWARE
HOH A:87 , HOH A:112 , HOH A:173 , GLY A:519 , ASN A:521 , THR A:667
BINDING SITE FOR RESIDUE UNX A 406
09
AC9
SOFTWARE
ARG A:692 , HIS A:696 , HIS A:717
BINDING SITE FOR RESIDUE UNX A 407
10
BC1
SOFTWARE
HOH A:57 , GLU A:589
BINDING SITE FOR RESIDUE UNX A 408
11
BC2
SOFTWARE
HOH A:26 , HOH A:184 , SER A:644 , SER A:647
BINDING SITE FOR RESIDUE UNX A 409
12
BC3
SOFTWARE
ASP A:472 , HIS A:480
BINDING SITE FOR RESIDUE UNX A 410
13
BC4
SOFTWARE
THR A:612 , GLU A:613
BINDING SITE FOR RESIDUE UNX A 411
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:445-766)
2: KINESIN_MOTOR_1 (A:668-679)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIFC3_HUMAN
445-768
1
A:445-766
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIFC3_HUMAN
668-679
1
A:668-679
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.13 (A:445-504)
Exon 1.14 (A:505-539)
Exon 1.15 (A:540-583)
Exon 1.16 (A:583-624)
Exon 1.17 (A:625-668)
Exon 1.18 (A:668-744 (gaps))
Exon 1.19 (A:745-766)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.18
7: Boundary 1.18/1.19
8: Boundary 1.19/1.20
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000379655
1b
ENSE00001928684
chr16:
57836435-57836282
154
KIFC3_HUMAN
-
0
0
-
-
1.2
ENST00000379655
2
ENSE00001482032
chr16:
57832194-57831984
211
KIFC3_HUMAN
1-58
58
0
-
-
1.4
ENST00000379655
4
ENSE00001662862
chr16:
57829053-57828911
143
KIFC3_HUMAN
58-105
48
0
-
-
1.6
ENST00000379655
6
ENSE00001680881
chr16:
57806200-57806135
66
KIFC3_HUMAN
106-127
22
0
-
-
1.7
ENST00000379655
7
ENSE00001643977
chr16:
57805598-57805455
144
KIFC3_HUMAN
128-175
48
0
-
-
1.8
ENST00000379655
8
ENSE00000945365
chr16:
57805349-57805110
240
KIFC3_HUMAN
176-255
80
0
-
-
1.9
ENST00000379655
9
ENSE00000945366
chr16:
57804612-57804439
174
KIFC3_HUMAN
256-313
58
0
-
-
1.10
ENST00000379655
10
ENSE00000945367
chr16:
57803867-57803720
148
KIFC3_HUMAN
314-363
50
0
-
-
1.11
ENST00000379655
11
ENSE00000945368
chr16:
57803637-57803507
131
KIFC3_HUMAN
363-406
44
0
-
-
1.12
ENST00000379655
12
ENSE00000945369
chr16:
57800897-57800786
112
KIFC3_HUMAN
407-444
38
0
-
-
1.13
ENST00000379655
13
ENSE00000945370
chr16:
57799552-57799371
182
KIFC3_HUMAN
444-504
61
1
A:445-504
60
1.14
ENST00000379655
14
ENSE00000945371
chr16:
57798159-57798055
105
KIFC3_HUMAN
505-539
35
1
A:505-539
35
1.15
ENST00000379655
15
ENSE00000945372
chr16:
57796182-57796052
131
KIFC3_HUMAN
540-583
44
1
A:540-583
44
1.16
ENST00000379655
16
ENSE00000945373
chr16:
57795448-57795325
124
KIFC3_HUMAN
583-624
42
1
A:583-624
42
1.17
ENST00000379655
17
ENSE00000945374
chr16:
57795083-57794954
130
KIFC3_HUMAN
625-668
44
1
A:625-668
44
1.18
ENST00000379655
18
ENSE00000945375
chr16:
57794867-57794638
230
KIFC3_HUMAN
668-744
77
1
A:668-744 (gaps)
77
1.19
ENST00000379655
19
ENSE00000945376
chr16:
57794328-57794194
135
KIFC3_HUMAN
745-789
45
1
A:745-766
22
1.20
ENST00000379655
20
ENSE00000945377
chr16:
57793748-57793640
109
KIFC3_HUMAN
790-826
37
0
-
-
1.22b
ENST00000379655
22b
ENSE00001270159
chr16:
57792821-57792129
693
KIFC3_HUMAN
826-833
8
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2h58a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d2h58a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2h58A00 (A:445-766)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
2h58A00
A:445-766
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (62 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2H58
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
