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2H4C
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (42 KB)
Biol.Unit 4 (42 KB)
Biol.Unit 5 (82 KB)
Biol.Unit 6 (81 KB)
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(1)
Title
:
STRUCTURE OF DABOIATOXIN (HETERODIMERIC PLA2 VENOM)
Authors
:
G. Gopalan, M. M. Thwin, P. Gopalakrishnakone, K. Swaminathan
Date
:
24 May 06 (Deposition) - 29 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: E,F,G,H (1x)
Biol. Unit 6: A,B,C,D (1x)
Keywords
:
Phospholipase A2, Non-Inhibitor Acidic Pla2, Basic Pla2, Heterodimer, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Gopalan, M. M. Thwin, P. Gopalakrishnakone, K. Swaminathan
Structural And Pharmacological Comparison Of Daboiatoxin From Daboia Russelli Siamensis With Viperotoxin F And Vipoxin From Other Vipers.
Acta Crystallogr. , Sect. D V. 63 722 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (B:44-51,D:44-51,F:44-51,H:44-51,A:...)
2: PA2_ASP (B:95-105,D:95-105,F:95-105,H:95-10...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2AB_DABSI
51-58
4
B:44-51
D:44-51
F:44-51
H:44-51
PA2AA_DABSI
59-66
4
A:44-51
C:44-51
E:44-51
G:44-51
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2AB_DABSI
93-103
4
B:95-105
D:95-105
F:95-105
H:95-105
PA2AA_DABSI
101-111
4
A:95-105
C:95-105
E:95-105
G:95-105
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2h4ca_ (A:)
1b: SCOP_d2h4cb_ (B:)
1c: SCOP_d2h4cc_ (C:)
1d: SCOP_d2h4cd_ (D:)
1e: SCOP_d2h4ce_ (E:)
1f: SCOP_d2h4cf_ (F:)
1g: SCOP_d2h4cg_ (G:)
1h: SCOP_d2h4ch_ (H:)
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
automated matches
(75)
Daboia russellii [TaxId: 343250]
(1)
1a
d2h4ca_
A:
1b
d2h4cb_
B:
1c
d2h4cc_
C:
1d
d2h4cd_
D:
1e
d2h4ce_
E:
1f
d2h4cf_
F:
1g
d2h4cg_
G:
1h
d2h4ch_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2h4cA00 (A:1-133)
1b: CATH_2h4cB00 (B:1-133)
1c: CATH_2h4cD00 (D:1-133)
1d: CATH_2h4cF00 (F:1-133)
1e: CATH_2h4cH00 (H:1-133)
1f: CATH_2h4cC00 (C:1-133)
1g: CATH_2h4cE00 (E:1-133)
1h: CATH_2h4cG00 (G:1-133)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Daboia russellii siamensis. Organism_taxid: 343250. Strain: siamensis.
(2)
1a
2h4cA00
A:1-133
1b
2h4cB00
B:1-133
1c
2h4cD00
D:1-133
1d
2h4cF00
F:1-133
1e
2h4cH00
H:1-133
1f
2h4cC00
C:1-133
1g
2h4cE00
E:1-133
1h
2h4cG00
G:1-133
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (166 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
Biol.Unit 3 (42 KB)
Header - Biol.Unit 3
Biol.Unit 4 (42 KB)
Header - Biol.Unit 4
Biol.Unit 5 (82 KB)
Header - Biol.Unit 5
Biol.Unit 6 (81 KB)
Header - Biol.Unit 6
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