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2H2R
Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN CD23 LECTIN DOMAIN, APO FORM
Authors
:
B. A. Wurzburg
Date
:
19 May 06 (Deposition) - 20 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
C-Type Lectin, Apo Form, Lectin Domain, Low Affinity Ige Receptor, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Wurzburg, S. S. Tarchevskaya, T. S. Jardetzky
Structural Changes In The Lectin Domain Of Cd23, The Low-Affinity Ige Receptor, Upon Calcium Binding.
Structure V. 14 1049 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035388 (R284Q, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035388
R
284
Q
FCER2_HUMAN
Polymorphism
8102872
A/B
R
284
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:170-277,B:170-277)
2: C_TYPE_LECTIN_1 (A:259-282,B:259-282)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
FCER2_HUMAN
170-277
2
A:170-277
B:170-277
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
FCER2_HUMAN
259-282
2
A:259-282
B:259-282
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Exons
(3, 6)
Info
All Exons
Exon 1.10 (A:158-207 | B:158-207)
Exon 1.11 (A:208-243 | B:208-243)
Exon 1.12b (A:243-292 | B:243-291)
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12b
4: Boundary 1.12b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000346664
1a
ENSE00001237098
chr19:
7766997-7766905
93
FCER2_HUMAN
-
0
0
-
-
1.2
ENST00000346664
2
ENSE00001397092
chr19:
7764731-7764625
107
FCER2_HUMAN
1-8
8
0
-
-
1.4
ENST00000346664
4
ENSE00000874617
chr19:
7763740-7763627
114
FCER2_HUMAN
8-46
39
0
-
-
1.5
ENST00000346664
5
ENSE00000671471
chr19:
7763295-7763242
54
FCER2_HUMAN
46-64
19
0
-
-
1.6
ENST00000346664
6
ENSE00000671470
chr19:
7762475-7762413
63
FCER2_HUMAN
64-85
22
0
-
-
1.7
ENST00000346664
7
ENSE00000671469
chr19:
7762184-7762122
63
FCER2_HUMAN
85-106
22
0
-
-
1.8
ENST00000346664
8
ENSE00001052912
chr19:
7761961-7761899
63
FCER2_HUMAN
106-127
22
0
-
-
1.9
ENST00000346664
9
ENSE00000671467
chr19:
7761800-7761711
90
FCER2_HUMAN
127-157
31
0
-
-
1.10
ENST00000346664
10
ENSE00000671466
chr19:
7755443-7755292
152
FCER2_HUMAN
157-207
51
2
A:158-207
B:158-207
50
50
1.11
ENST00000346664
11
ENSE00000671465
chr19:
7755151-7755045
107
FCER2_HUMAN
208-243
36
2
A:208-243
B:208-243
36
36
1.12b
ENST00000346664
12b
ENSE00001517758
chr19:
7754316-7753663
654
FCER2_HUMAN
243-321
79
2
A:243-292
B:243-291
50
49
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2h2ra_ (A:)
1b: SCOP_d2h2rb_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2h2ra_
A:
1b
d2h2rb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2h2rA01 (A:166-286)
1b: CATH_2h2rB01 (B:166-286)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
2h2rA01
A:166-286
1b
2h2rB01
B:166-286
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (112 KB)
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