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2H12
Asym. Unit
Info
Asym.Unit (480 KB)
Biol.Unit 1 (470 KB)
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(1)
Title
:
STRUCTURE OF ACETOBACTER ACETI CITRATE SYNTHASE COMPLEXED WITH OXALOACETATE AND CARBOXYMETHYLDETHIA COENZYME A (CMX)
Authors
:
C. M. Starks, T. J. Kappock
Date
:
15 May 06 (Deposition) - 26 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Acidophile, Citrate Synthase, Acetic Acid Resistance, Allostery, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Francois, C. M. Starks, S. Sivanuntakorn, H. Jiang, A. E. Ransome, J. W. Nam, C. Z. Constantine, T. J. Kappock
Structure Of A Nadh-Insensitive Hexameric Citrate Synthase That Resists Acid Inactivation.
Biochemistry V. 45 13487 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 53)
Info
All Hetero Components
1a: CARBOXYMETHYLDETHIA COENZYME *A (CMXa)
1b: CARBOXYMETHYLDETHIA COENZYME *A (CMXb)
1c: CARBOXYMETHYLDETHIA COENZYME *A (CMXc)
1d: CARBOXYMETHYLDETHIA COENZYME *A (CMXd)
1e: CARBOXYMETHYLDETHIA COENZYME *A (CMXe)
1f: CARBOXYMETHYLDETHIA COENZYME *A (CMXf)
2a: OXALOACETATE ION (OAAa)
2b: OXALOACETATE ION (OAAb)
2c: OXALOACETATE ION (OAAc)
2d: OXALOACETATE ION (OAAd)
2e: OXALOACETATE ION (OAAe)
2f: OXALOACETATE ION (OAAf)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3ak: SULFATE ION (SO4ak)
3al: SULFATE ION (SO4al)
3am: SULFATE ION (SO4am)
3an: SULFATE ION (SO4an)
3ao: SULFATE ION (SO4ao)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMX
6
Ligand/Ion
CARBOXYMETHYLDETHIA COENZYME *A
2
OAA
6
Ligand/Ion
OXALOACETATE ION
3
SO4
41
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(53, 53)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:237 , ASN A:240 , HIS A:272 , HIS A:313 , ARG A:322 , ARG A:396 , CMX A:5001 , HOH A:5086 , HOH A:5104 , ARG B:417
BINDING SITE FOR RESIDUE OAA A 5007
02
AC2
SOFTWARE
ARG A:417 , HIS B:237 , ASN B:240 , HIS B:272 , HIS B:313 , ARG B:322 , PHE B:392 , ARG B:396 , CMX B:5002 , HOH B:5055 , HOH B:5083
BINDING SITE FOR RESIDUE OAA B 5008
03
AC3
SOFTWARE
HIS C:237 , ASN C:240 , HIS C:272 , HIS C:313 , ARG C:322 , PHE C:392 , ARG C:396 , CMX C:5003 , HOH C:5057 , HOH C:5114 , ARG D:417
BINDING SITE FOR RESIDUE OAA C 5009
04
AC4
SOFTWARE
ARG C:417 , HIS D:237 , ASN D:240 , HIS D:272 , HIS D:313 , ARG D:322 , PHE D:392 , ARG D:396 , CMX D:5004 , HOH D:5077 , HOH D:5079
BINDING SITE FOR RESIDUE OAA D 5010
05
AC5
SOFTWARE
HIS E:237 , ASN E:240 , HIS E:272 , HIS E:313 , ARG E:322 , PHE E:392 , ARG E:396 , CMX E:5005 , HOH E:5075 , HOH E:5104 , ARG F:417
BINDING SITE FOR RESIDUE OAA E 5011
06
AC6
SOFTWARE
ARG E:417 , HIS F:237 , ASN F:240 , HIS F:272 , HIS F:313 , ARG F:322 , ARG F:396 , CMX F:5006 , HOH F:5072 , HOH F:5082
BINDING SITE FOR RESIDUE OAA F 5012
07
AC7
SOFTWARE
ARG A:419 , PRO B:33 , ILE B:67 , GLY B:69 , ASP B:70 , HOH B:5131 , HOH B:5162 , HOH B:5370 , HOH B:5404 , HOH B:5461
BINDING SITE FOR RESIDUE SO4 B 5013
08
AC8
SOFTWARE
HIS A:118 , TYR A:153 , ARG A:171 , LYS A:175 , HOH A:5171 , HOH A:5487
BINDING SITE FOR RESIDUE SO4 A 5014
09
AC9
SOFTWARE
PRO A:33 , GLY A:69 , ASP A:70 , HOH A:5118 , HOH A:5123 , HOH A:5254 , HOH A:5391 , HOH A:5510 , ARG B:419
BINDING SITE FOR RESIDUE SO4 A 5015
10
BC1
SOFTWARE
HIS B:118 , TYR B:153 , ARG B:171 , LYS B:175 , HOH B:5101 , HOH B:5239 , HOH B:5445
BINDING SITE FOR RESIDUE SO4 B 5016
11
BC2
SOFTWARE
HOH A:5415 , TYR B:430 , PRO B:432 , LEU B:433 , ARG B:436 , HOH B:5140 , HOH B:5197 , HOH B:5305 , HOH B:5443 , HOH B:5502
BINDING SITE FOR RESIDUE SO4 B 5017
12
BC3
SOFTWARE
ARG C:419 , PRO D:33 , ILE D:67 , GLY D:69 , ASP D:70 , HOH D:5100 , HOH D:5112 , HOH D:5331 , HOH D:5428
BINDING SITE FOR RESIDUE SO4 D 5018
13
BC4
SOFTWARE
HIS C:118 , TYR C:153 , ARG C:171 , LYS C:175 , HOH C:5136 , HOH C:5213 , HOH C:5539
BINDING SITE FOR RESIDUE SO4 C 5019
14
BC5
SOFTWARE
PRO C:33 , GLY C:69 , ASP C:70 , HOH C:5071 , HOH C:5177 , HOH C:5358 , ARG D:419
BINDING SITE FOR RESIDUE SO4 C 5020
15
BC6
SOFTWARE
HIS D:118 , TYR D:153 , ARG D:171 , LYS D:175 , HOH D:5167
BINDING SITE FOR RESIDUE SO4 D 5021
16
BC7
SOFTWARE
ARG E:419 , PRO F:33 , ILE F:67 , ASP F:68 , GLY F:69 , ASP F:70 , HOH F:5089 , HOH F:5116 , HOH F:5288 , HOH F:5330 , HOH F:5373
BINDING SITE FOR RESIDUE SO4 F 5022
17
BC8
SOFTWARE
HIS E:118 , TYR E:153 , ARG E:171 , LYS E:175 , HOH E:5124 , HOH E:5215 , HOH E:5409 , HOH E:5552
BINDING SITE FOR RESIDUE SO4 E 5023
18
BC9
SOFTWARE
TYR E:430 , PRO E:432 , LEU E:433 , ARG E:436 , HOH E:5248 , HOH E:5353 , HOH F:5228
BINDING SITE FOR RESIDUE SO4 E 5024
19
CC1
SOFTWARE
PRO E:33 , ILE E:67 , ASP E:68 , GLY E:69 , ASP E:70 , HOH E:5065 , HOH E:5127 , HOH E:5300 , HOH E:5365 , ARG F:419
BINDING SITE FOR RESIDUE SO4 E 5025
20
CC2
SOFTWARE
HIS F:118 , TYR F:153 , ARG F:171 , LYS F:175 , HOH F:5189 , HOH F:5209 , HOH F:5423 , HOH F:5465
BINDING SITE FOR RESIDUE SO4 F 5026
21
CC3
SOFTWARE
TYR C:430 , PRO C:432 , LEU C:433 , ARG C:436 , HOH C:5493 , GLY D:19 , GLU D:92 , HOH D:5246 , HOH D:5391
BINDING SITE FOR RESIDUE SO4 C 5027
22
CC4
SOFTWARE
HOH C:5227 , HOH C:5337 , TYR D:430 , PRO D:432 , LEU D:433 , ARG D:436 , HOH D:5249
BINDING SITE FOR RESIDUE SO4 D 5028
23
CC5
SOFTWARE
THR A:114 , ASN A:117 , HIS A:118 , HOH A:5531
BINDING SITE FOR RESIDUE SO4 A 5029
24
CC6
SOFTWARE
THR B:114 , ASN B:117 , HIS B:118 , HOH B:5371 , HOH B:5527 , HOH B:5585
BINDING SITE FOR RESIDUE SO4 B 5030
25
CC7
SOFTWARE
THR C:114 , ASN C:117 , HIS C:118 , HOH C:5368
BINDING SITE FOR RESIDUE SO4 C 5031
26
CC8
SOFTWARE
THR D:114 , ASN D:117 , HIS D:118 , HOH D:5381
BINDING SITE FOR RESIDUE SO4 D 5032
27
CC9
SOFTWARE
THR E:114 , ASN E:117 , HIS E:118 , HOH E:5288 , HOH E:5522
BINDING SITE FOR RESIDUE SO4 E 5033
28
DC1
SOFTWARE
THR F:114 , ASN F:117 , HIS F:118 , HOH F:5425 , HOH F:5522
BINDING SITE FOR RESIDUE SO4 F 5034
29
DC2
SOFTWARE
THR A:110 , ASN A:113 , HOH A:5277
BINDING SITE FOR RESIDUE SO4 A 5035
30
DC3
SOFTWARE
THR B:110 , ASN B:113 , HOH B:5157 , HOH B:5174 , HOH B:5465
BINDING SITE FOR RESIDUE SO4 B 5036
31
DC4
SOFTWARE
THR E:110 , ASN E:113 , HOH E:5185
BINDING SITE FOR RESIDUE SO4 E 5037
32
DC5
SOFTWARE
THR F:110 , ASN F:113 , HOH F:5190 , HOH F:5521
BINDING SITE FOR RESIDUE SO4 F 5038
33
DC6
SOFTWARE
ASP B:155 , LEU B:167 , ARG B:171 , HOH B:5403 , HOH B:5516
BINDING SITE FOR RESIDUE SO4 B 5039
34
DC7
SOFTWARE
LEU A:167 , ARG A:171 , HOH A:5362
BINDING SITE FOR RESIDUE SO4 A 5040
35
DC8
SOFTWARE
ASP C:155 , ARG C:171 , HOH C:5208 , HOH C:5532
BINDING SITE FOR RESIDUE SO4 C 5041
36
DC9
SOFTWARE
LEU D:167 , ARG D:171 , HOH D:5416
BINDING SITE FOR RESIDUE SO4 D 5042
37
EC1
SOFTWARE
ASP E:155 , ARG E:171 , HOH E:5266 , HOH E:5414
BINDING SITE FOR RESIDUE SO4 E 5043
38
EC2
SOFTWARE
ARG F:171 , HOH F:5349 , HOH F:5455
BINDING SITE FOR RESIDUE SO4 F 5044
39
EC3
SOFTWARE
GLN B:427 , HOH B:5209 , HOH B:5365 , HOH B:5478 , HOH B:5575
BINDING SITE FOR RESIDUE SO4 B 5045
40
EC4
SOFTWARE
PRO C:221 , ARG C:225
BINDING SITE FOR RESIDUE SO4 C 5046
41
EC5
SOFTWARE
LYS A:20 , PRO A:221 , ARG A:225
BINDING SITE FOR RESIDUE SO4 A 5047
42
EC6
SOFTWARE
ARG B:225 , HOH B:5601
BINDING SITE FOR RESIDUE SO4 B 5048
43
EC7
SOFTWARE
PRO D:221 , ARG D:225
BINDING SITE FOR RESIDUE SO4 D 5049
44
EC8
SOFTWARE
PRO E:221 , ARG E:225 , HOH E:5537
BINDING SITE FOR RESIDUE SO4 E 5050
45
EC9
SOFTWARE
PRO F:221 , ARG F:225 , HOH F:5514
BINDING SITE FOR RESIDUE SO4 F 5051
46
FC1
SOFTWARE
ARG A:133 , HOH A:5569 , ASP D:135
BINDING SITE FOR RESIDUE SO4 A 5052
47
FC2
SOFTWARE
ARG B:133 , HOH B:5381 , ASP E:135
BINDING SITE FOR RESIDUE SO4 B 5053
48
FC3
SOFTWARE
ALA A:271 , HIS A:272 , ALA A:275 , VAL A:299 , LYS A:307 , LEU A:308 , GLY A:310 , PHE A:311 , GLY A:312 , HIS A:313 , ARG A:314 , TYR A:360 , ARG A:364 , LEU A:366 , ASN A:369 , ASP A:371 , PHE A:392 , OAA A:5007 , HOH A:5057 , HOH A:5108 , HOH A:5215 , HOH A:5314 , HOH A:5405 , HOH A:5474 , HOH A:5486 , HOH A:5502 , ARG B:414
BINDING SITE FOR RESIDUE CMX A 5001
49
FC4
SOFTWARE
ARG A:414 , ALA B:271 , HIS B:272 , ALA B:275 , VAL B:299 , LYS B:307 , LEU B:308 , GLY B:310 , PHE B:311 , GLY B:312 , HIS B:313 , ARG B:314 , TYR B:360 , ARG B:364 , LEU B:366 , ASN B:369 , ASP B:371 , PHE B:392 , OAA B:5008 , HOH B:5078 , HOH B:5082 , HOH B:5181 , HOH B:5380 , HOH B:5388 , HOH B:5406 , HOH B:5491 , HOH B:5586
BINDING SITE FOR RESIDUE CMX B 5002
50
FC5
SOFTWARE
ALA C:271 , HIS C:272 , ALA C:275 , VAL C:299 , LYS C:307 , LEU C:308 , GLY C:310 , PHE C:311 , GLY C:312 , HIS C:313 , ARG C:314 , TYR C:360 , ARG C:364 , LEU C:366 , ASN C:369 , ASP C:371 , PHE C:392 , OAA C:5009 , HOH C:5054 , HOH C:5098 , HOH C:5159 , HOH C:5351 , HOH C:5398 , HOH C:5440 , HOH C:5463 , HOH C:5554 , HOH C:5562 , ARG D:414
BINDING SITE FOR RESIDUE CMX C 5003
51
FC6
SOFTWARE
ARG C:414 , ALA D:271 , HIS D:272 , ALA D:275 , VAL D:299 , LYS D:307 , LEU D:308 , GLY D:310 , PHE D:311 , GLY D:312 , ARG D:314 , TYR D:360 , ARG D:364 , LEU D:366 , ASN D:369 , ASP D:371 , PHE D:392 , OAA D:5010 , HOH D:5076 , HOH D:5088 , HOH D:5099 , HOH D:5313 , HOH D:5406 , HOH D:5419
BINDING SITE FOR RESIDUE CMX D 5004
52
FC7
SOFTWARE
ALA E:271 , HIS E:272 , ALA E:275 , VAL E:299 , LEU E:308 , GLY E:310 , PHE E:311 , GLY E:312 , HIS E:313 , ARG E:314 , TYR E:360 , ARG E:364 , LEU E:366 , ASN E:369 , ASP E:371 , PHE E:392 , OAA E:5011 , HOH E:5055 , HOH E:5102 , HOH E:5137 , HOH E:5403 , HOH E:5554 , ARG F:414
BINDING SITE FOR RESIDUE CMX E 5005
53
FC8
SOFTWARE
ARG E:414 , ALA F:271 , HIS F:272 , ALA F:275 , VAL F:299 , LYS F:307 , LEU F:308 , GLY F:310 , PHE F:311 , GLY F:312 , HIS F:313 , ARG F:314 , TYR F:360 , ARG F:364 , LEU F:366 , ASN F:369 , ASP F:371 , PHE F:392 , OAA F:5012 , HOH F:5067 , HOH F:5090 , HOH F:5152 , HOH F:5441 , HOH F:5458 , HOH F:5467 , HOH F:5529
BINDING SITE FOR RESIDUE CMX F 5006
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CITRATE_SYNTHASE (A:310-322,B:310-322,C:310-322,D:31...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CITRATE_SYNTHASE
PS00480
Citrate synthase signature.
CISY_ACEAC
310-322
6
A:310-322
B:310-322
C:310-322
D:310-322
E:310-322
F:310-322
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2h12a_ (A:)
1b: SCOP_d2h12b_ (B:)
1c: SCOP_d2h12c_ (C:)
1d: SCOP_d2h12d_ (D:)
1e: SCOP_d2h12e_ (E:)
1f: SCOP_d2h12f_ (F:)
View:
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)
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Folds
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Citrate synthase
(43)
Superfamily
:
Citrate synthase
(43)
Family
:
Citrate synthase
(38)
Protein domain
:
automated matches
(6)
Acetobacter aceti [TaxId: 435]
(1)
1a
d2h12a_
A:
1b
d2h12b_
B:
1c
d2h12c_
C:
1d
d2h12d_
D:
1e
d2h12e_
E:
1f
d2h12f_
F:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2h12B02 (B:58-274,B:385-410)
1b: CATH_2h12C02 (C:58-274,C:385-410)
1c: CATH_2h12E02 (E:58-274,E:385-410)
1d: CATH_2h12F02 (F:58-274,F:385-410)
1e: CATH_2h12A02 (A:58-274,A:385-410)
1f: CATH_2h12D02 (D:58-274,D:385-410)
2a: CATH_2h12A03 (A:275-384)
2b: CATH_2h12B03 (B:275-384)
2c: CATH_2h12C03 (C:275-384)
2d: CATH_2h12D03 (D:275-384)
2e: CATH_2h12E03 (E:275-384)
2f: CATH_2h12F03 (F:275-384)
View:
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)
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)
Architectures
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)
(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Citrate Synthase; domain 1
(32)
Homologous Superfamily
:
Citrate Synthase, domain 1
(32)
Acetobacter aceti. Organism_taxid: 435. Strain: 1023.
(1)
1a
2h12B02
B:58-274,B:385-410
1b
2h12C02
C:58-274,C:385-410
1c
2h12E02
E:58-274,E:385-410
1d
2h12F02
F:58-274,F:385-410
1e
2h12A02
A:58-274,A:385-410
1f
2h12D02
D:58-274,D:385-410
Topology
:
Cytochrome p450-Terp; domain 2
(32)
Homologous Superfamily
:
Cytochrome P450-Terp, domain 2
(32)
Acetobacter aceti. Organism_taxid: 435. Strain: 1023.
(1)
2a
2h12A03
A:275-384
2b
2h12B03
B:275-384
2c
2h12C03
C:275-384
2d
2h12D03
D:275-384
2e
2h12E03
E:275-384
2f
2h12F03
F:275-384
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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close
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (480 KB)
Header - Asym.Unit
Biol.Unit 1 (470 KB)
Header - Biol.Unit 1
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