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2H11
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
AMINO-TERMINAL TRUNCATED THIOPURINE S-METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE
Authors
:
J. R. Horton, X. Cheng
Date
:
15 May 06 (Deposition) - 21 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Binary Protein-Cofactor Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Horton, X. Cheng
Amino-Terminal Truncated Thiopurine S-Methyltransferase Complexed With S-Adenosyl-L-Homocysteine
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pa)
1b: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pb)
1c: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pc)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
3a: THIOCYANATE ION (SCNa)
3b: THIOCYANATE ION (SCNb)
3c: THIOCYANATE ION (SCNc)
3d: THIOCYANATE ION (SCNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B3P
3
Ligand/Ion
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
3
SCN
4
Ligand/Ion
THIOCYANATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:110 , PRO A:111 , HOH A:447 , ARG B:215
BINDING SITE FOR RESIDUE SCN A 4
2
AC2
SOFTWARE
ARG A:215 , GLU B:110 , PRO B:111 , HOH B:457
BINDING SITE FOR RESIDUE SCN B 5
3
AC3
SOFTWARE
ARG B:64 , LYS B:122 , SER B:129 , TYR B:131
BINDING SITE FOR RESIDUE SCN B 6
4
AC4
SOFTWARE
B3P A:1 , ARG A:64 , SER A:129 , TYR A:131 , HOH A:386
BINDING SITE FOR RESIDUE SCN A 7
5
AC5
SOFTWARE
LEU A:26 , TRP A:29 , TRP A:33 , PHE A:40 , LEU A:69 , CYS A:70 , GLU A:90 , ILE A:91 , CYS A:133 , SER A:134 , ILE A:135 , ARG A:152 , GLY A:153 , HOH A:309 , HOH A:315 , HOH A:319 , HOH A:379 , HOH A:385
BINDING SITE FOR RESIDUE SAH A 300
6
AC6
SOFTWARE
LEU B:26 , TRP B:29 , TRP B:33 , PHE B:40 , LEU B:69 , CYS B:70 , GLU B:90 , ILE B:91 , CYS B:133 , SER B:134 , ILE B:135 , ARG B:152 , GLY B:153 , HOH B:313 , HOH B:319 , HOH B:323 , HOH B:382 , HOH B:387
BINDING SITE FOR RESIDUE SAH B 301
7
AC7
SOFTWARE
SCN A:7 , ARG A:64 , PRO A:111 , ILE A:112 , THR A:113 , GLU A:114 , TYR A:131 , ASN A:142 , ILE A:143 , HOH A:350 , HOH A:397 , HOH A:402 , HOH A:403 , HOH A:439 , LYS B:228 , SER B:229
BINDING SITE FOR RESIDUE B3P A 1
8
AC8
SOFTWARE
LYS A:228 , SER A:229 , ARG B:64 , PRO B:111 , ILE B:112 , THR B:113 , GLU B:114 , LYS B:122 , TYR B:131 , THR B:141 , ASN B:142 , ILE B:143 , HOH B:354 , HOH B:396 , HOH B:400 , HOH B:401 , HOH B:437 , HOH B:438
BINDING SITE FOR RESIDUE B3P B 2
9
AC9
SOFTWARE
ILE A:115 , SER A:134 , ASP A:137 , HOH A:415 , HOH A:435 , ILE B:115 , ASP B:137
BINDING SITE FOR RESIDUE B3P A 3
[
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_005636 (L49S, chain A/B, )
2: VAR_005637 (A80P, chain A/B, )
3: VAR_005638 (A154T, chain A/B, )
4: VAR_052368 (Q179H, chain A/B, )
5: VAR_005639 (Y180F, chain A/B, )
6: VAR_008715 (R215H, chain A/B, )
7: VAR_005640 (H227Q, chain A/B, )
8: VAR_005641 (Y240C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_005636
L
49
S
TPMT_HUMAN
Polymorphism
72552740
A/B
L
49
S
2
UniProt
VAR_005637
A
80
P
TPMT_HUMAN
Disease (TPMT deficiency)
1800462
A/B
A
80
P
3
UniProt
VAR_005638
A
154
T
TPMT_HUMAN
Disease (TPMT deficiency)
1800460
A/B
A
154
T
4
UniProt
VAR_052368
Q
179
H
TPMT_HUMAN
Polymorphism
6921269
A/B
Q
179
H
5
UniProt
VAR_005639
Y
180
F
TPMT_HUMAN
Polymorphism
75543815
A/B
Y
180
F
6
UniProt
VAR_008715
R
215
H
TPMT_HUMAN
Disease (TPMT deficiency)
56161402
A/B
R
215
H
7
UniProt
VAR_005640
H
227
Q
TPMT_HUMAN
Disease (TPMT deficiency)
72552736
A/B
H
227
Q
8
UniProt
VAR_005641
Y
240
C
TPMT_HUMAN
Disease (TPMT deficiency)
1142345
A/B
Y
240
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SAM_MT_TPMT (A:26-240,B:26-240)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_MT_TPMT
PS51585
Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.
TPMT_HUMAN
26-240
2
A:26-240
B:26-240
[
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Exons
(8, 16)
Info
All Exons
Exon 1.2 (A:17-47 | B:17-47)
Exon 1.3 (A:47-78 | B:47-78)
Exon 1.4 (A:78-122 | B:78-122)
Exon 1.5 (A:123-140 | B:123-140)
Exon 1.6 (A:140-165 | B:140-165)
Exon 1.7 (A:165-194 | B:165-194)
Exon 1.8 (A:194-209 | B:194-209)
Exon 1.9 (A:209-245 | B:209-245)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000309983
1
ENSE00001478514
chr6:
18155305-18155264
42
TPMT_HUMAN
-
0
0
-
-
1.2
ENST00000309983
2
ENSE00000928742
chr6:
18149402-18149219
184
TPMT_HUMAN
1-47
47
2
A:17-47
B:17-47
31
31
1.3
ENST00000309983
3
ENSE00000928741
chr6:
18148146-18148054
93
TPMT_HUMAN
47-78
32
2
A:47-78
B:47-78
32
32
1.4
ENST00000309983
4
ENSE00000928740
chr6:
18143959-18143827
133
TPMT_HUMAN
78-122
45
2
A:78-122
B:78-122
45
45
1.5
ENST00000309983
5
ENSE00000928739
chr6:
18139948-18139896
53
TPMT_HUMAN
123-140
18
2
A:123-140
B:123-140
18
18
1.6
ENST00000309983
6
ENSE00000928738
chr6:
18139268-18139194
75
TPMT_HUMAN
140-165
26
2
A:140-165
B:140-165
26
26
1.7
ENST00000309983
7
ENSE00000928737
chr6:
18134120-18134035
86
TPMT_HUMAN
165-194
30
2
A:165-194
B:165-194
30
30
1.8
ENST00000309983
8
ENSE00000928736
chr6:
18132408-18132364
45
TPMT_HUMAN
194-209
16
2
A:194-209
B:194-209
16
16
1.9
ENST00000309983
9
ENSE00001209706
chr6:
18131011-18128542
2470
TPMT_HUMAN
209-245
37
2
A:209-245
B:209-245
37
37
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2h11a_ (A:)
1b: SCOP_d2h11b_ (B:)
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Classes
(
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(
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Folds
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(
)
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(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Thiopurine S-methyltransferase
(6)
Protein domain
:
Thiopurine S-methyltransferase
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2h11a_
A:
1b
d2h11b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Nucleic
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