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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2H0D
Asym. Unit
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Asym.Unit (39 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
STRUCTURE OF A BMI-1-RING1B POLYCOMB GROUP UBIQUITIN LIGASE COMPLEX
Authors
:
R. M. Xu
Date
:
14 May 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Polycomb, Chromatin, Ubiquitin Ligase, Histone, Transcription, Wpigenetics, Metal Binding Protein-Ligase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Li, R. Cao, M. Wang, M. P. Myers, Y. Zhang, R. M. Xu
Structure Of A Bmi-1-Ring1B Polycomb Group Ubiquitin Ligase Complex.
J. Biol. Chem. V. 281 20643 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , CYS A:39 , CYS A:42
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:34 , HIS A:36 , CYS A:53 , CYS A:56
BINDING SITE FOR RESIDUE ZN A 202
3
AC3
SOFTWARE
CYS B:51 , CYS B:54 , CYS B:72 , CYS B:75
BINDING SITE FOR RESIDUE ZN B 203
4
AC4
SOFTWARE
CYS B:67 , HIS B:69 , CYS B:87 , CYS B:90
BINDING SITE FOR RESIDUE ZN B 204
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052087 (C18Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052087
C
18
Y
BMI1_HUMAN
Polymorphism
1042059
A
C
18
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_RING_2 (A:18-57,B:51-91)
2: ZF_RING_1 (A:34-43,B:67-76)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RING_2
PS50089
Zinc finger RING-type profile.
BMI1_HUMAN
18-57
1
A:18-57
RING2_HUMAN
51-91
1
B:51-91
2
ZF_RING_1
PS00518
Zinc finger RING-type signature.
BMI1_HUMAN
34-43
1
A:34-43
RING2_HUMAN
67-76
1
B:67-76
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Exons
(7, 7)
Info
All Exons
Exon 1.3 (B:15-29)
Exon 1.4a (B:30-83)
Exon 1.5 (B:83-114)
Exon 2.5a (A:5-38)
Exon 2.6 (A:38-70)
Exon 2.7b (A:70-89)
Exon 2.8b (A:89-101)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6
5: Boundary 2.2/2.5a
6: Boundary 2.5a/2.6
7: Boundary 2.6/2.7b
8: Boundary 2.7b/2.8b
9: Boundary 2.8b/2.9d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367510
1a
ENSE00001030490
chr1:
185014496-185014781
286
RING2_HUMAN
-
0
0
-
-
1.3
ENST00000367510
3
ENSE00002199249
chr1:
185056684-185056772
89
RING2_HUMAN
1-29
29
1
B:15-29
15
1.4a
ENST00000367510
4a
ENSE00000822928
chr1:
185060711-185060871
161
RING2_HUMAN
30-83
54
1
B:30-83
54
1.5
ENST00000367510
5
ENSE00000822929
chr1:
185062193-185062408
216
RING2_HUMAN
83-155
73
1
B:83-114
32
1.6
ENST00000367510
6
ENSE00000822930
chr1:
185067204-185067476
273
RING2_HUMAN
155-246
92
0
-
-
1.7b
ENST00000367510
7b
ENSE00000822931
chr1:
185068923-185069094
172
RING2_HUMAN
246-303
58
0
-
-
1.8b
ENST00000367510
8b
ENSE00001030494
chr1:
185069332-185071740
2409
RING2_HUMAN
304-336
33
0
-
-
2.2
ENST00000376663
2
ENSE00001251863
chr10:
22610140-22610625
486
BMI1_HUMAN
-
0
0
-
-
2.5a
ENST00000376663
5a
ENSE00001149872
chr10:
22615360-22615490
131
BMI1_HUMAN
1-38
38
1
A:5-38
34
2.6
ENST00000376663
6
ENSE00001628582
chr10:
22615819-22615915
97
BMI1_HUMAN
38-70
33
1
A:38-70
33
2.7b
ENST00000376663
7b
ENSE00001137647
chr10:
22616524-22616579
56
BMI1_HUMAN
70-89
20
1
A:70-89
20
2.8b
ENST00000376663
8b
ENSE00002142041
chr10:
22616671-22616721
51
BMI1_HUMAN
89-106
18
1
A:89-101
13
2.9d
ENST00000376663
9d
ENSE00002181455
chr10:
22616879-22616987
109
BMI1_HUMAN
106-142
37
0
-
-
2.9f
ENST00000376663
9f
ENSE00001705310
chr10:
22617063-22617108
46
BMI1_HUMAN
142-157
16
0
-
-
2.10
ENST00000376663
10
ENSE00001594852
chr10:
22617529-22617627
99
BMI1_HUMAN
158-190
33
0
-
-
2.11c
ENST00000376663
11c
ENSE00001777532
chr10:
22617977-22618057
81
BMI1_HUMAN
191-217
27
0
-
-
2.12e
ENST00000376663
12e
ENSE00001916123
chr10:
22618142-22620413
2272
BMI1_HUMAN
218-326
109
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (39 KB)
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