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2H07
Biol. Unit 1
Info
Asym.Unit (104 KB)
Biol.Unit 1 (292 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE 1 MUTANT S132A
Authors
:
S. Li, B. Peng, J. Ding
Date
:
14 May 06 (Deposition) - 24 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Prs1, Prpp Synthetase 1, Phosphoribosyl Pyrophosphate Synthetase 1, Mutant, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Li, Y. Lu, B. Peng, J. Ding
Crystal Structure Of Human Phosphoribosylpyrophosphate Synthetase 1 Reveals A Novel Allosteric Site
Biochem. J. V. 401 39 2007
[
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
18
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:224 , THR B:225 , CYS B:226 , GLY B:227 , THR B:228 , HOH B:1081 , HOH B:1082
BINDING SITE FOR RESIDUE SO4 B 1001
2
AC2
SOFTWARE
ASP A:224 , THR A:225 , CYS A:226 , GLY A:227 , THR A:228 , HOH A:1054
BINDING SITE FOR RESIDUE SO4 A 1002
3
AC3
SOFTWARE
ARG A:104 , SER B:47 , ARG B:49 , SER B:308 , VAL B:309 , SER B:310 , HOH B:1010
BINDING SITE FOR RESIDUE SO4 B 1003
4
AC4
SOFTWARE
SER A:47 , ARG A:49 , SER A:308 , VAL A:309 , SER A:310 , HOH A:1010 , ARG B:104
BINDING SITE FOR RESIDUE SO4 A 1004
5
AC5
SOFTWARE
ASP A:101 , LYS A:102 , ALA B:132 , GLN B:135 , ASN B:144 , TYR B:146 , HOH B:1007
BINDING SITE FOR RESIDUE SO4 B 1005
6
AC6
SOFTWARE
ALA A:132 , GLN A:135 , ASN A:144 , TYR A:146 , HOH A:1008 , HOH A:1037 , HOH A:1040 , LYS B:99 , LYS B:100 , ASP B:101 , LYS B:102
BINDING SITE FOR RESIDUE SO4 A 1006
[
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]
SAPs(SNPs)/Variants
(18, 108)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_072719 (S16P, chain A/B, )
02: VAR_036941 (E43D, chain A/B, )
03: VAR_016044 (D52H, chain A/B, )
04: VAR_063522 (D65N, chain A/B, )
05: VAR_063523 (A87T, chain A/B, )
06: VAR_004163 (N114S, chain A/B, )
07: VAR_036942 (M115T, chain A/B, )
08: VAR_016045 (L129I, chain A/B, )
09: VAR_036943 (Q133P, chain A/B, )
10: VAR_036944 (L152P, chain A/B, )
11: VAR_004164 (D183H, chain A/B, )
12: VAR_016046 (A190V, chain A/B, )
13: VAR_016047 (H193Q, chain A/B, )
14: VAR_036593 (D203H, chain A/B, )
15: VAR_036594 (V219G, chain A/B, )
16: VAR_036595 (H231D, chain A/B, )
17: VAR_063524 (I290T, chain A/B, )
18: VAR_063525 (G306R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072719
S
16
P
PRPS1_HUMAN
Disease
---
A/B
S
16
P
02
UniProt
VAR_036941
E
43
D
PRPS1_HUMAN
Disease (CMTX5)
---
A/B
E
43
D
03
UniProt
VAR_016044
D
52
H
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
D
52
H
04
UniProt
VAR_063522
D
65
N
PRPS1_HUMAN
Disease (DFNX1)
---
A/B
D
65
N
05
UniProt
VAR_063523
A
87
T
PRPS1_HUMAN
Disease (DFNX1)
---
A/B
A
87
T
06
UniProt
VAR_004163
N
114
S
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
N
114
S
07
UniProt
VAR_036942
M
115
T
PRPS1_HUMAN
Disease (CMTX5)
---
A/B
M
115
T
08
UniProt
VAR_016045
L
129
I
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
L
129
I
09
UniProt
VAR_036943
Q
133
P
PRPS1_HUMAN
Disease (ARTS)
---
A/B
Q
133
P
10
UniProt
VAR_036944
L
152
P
PRPS1_HUMAN
Disease (ARTS)
---
A/B
L
152
P
11
UniProt
VAR_004164
D
183
H
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
D
183
H
12
UniProt
VAR_016046
A
190
V
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
A
190
V
13
UniProt
VAR_016047
H
193
Q
PRPS1_HUMAN
Disease (PRPS1 superactivity)
---
A/B
H
193
Q
14
UniProt
VAR_036593
D
203
H
PRPS1_HUMAN
Unclassified
---
A/B
D
203
H
15
UniProt
VAR_036594
V
219
G
PRPS1_HUMAN
Unclassified
---
A/B
V
219
G
16
UniProt
VAR_036595
H
231
D
PRPS1_HUMAN
Unclassified
---
A/B
H
231
D
17
UniProt
VAR_063524
I
290
T
PRPS1_HUMAN
Disease (DFNX1)
---
A/B
I
290
T
18
UniProt
VAR_063525
G
306
R
PRPS1_HUMAN
Disease (DFNX1)
---
A/B
G
306
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PRPP_SYNTHASE (A:128-143,B:128-143)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRPP_SYNTHASE
PS00114
Phosphoribosyl pyrophosphate synthase signature.
PRPS1_HUMAN
128-143
6
A:128-143
B:128-143
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2h07a1 (A:3-160)
1b: SCOP_d2h07a2 (A:161-313)
1c: SCOP_d2h07b1 (B:3-160)
1d: SCOP_d2h07b2 (B:161-317)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2h07a1
A:3-160
1b
d2h07a2
A:161-313
1c
d2h07b1
B:3-160
1d
d2h07b2
B:161-317
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2h07A01 (A:3-146,A:291-311)
1b: CATH_2h07B01 (B:3-146,B:291-311)
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(
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Human (Homo sapiens)
(19)
1a
2h07A01
A:3-146,A:291-311
1b
2h07B01
B:3-146,B:291-311
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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