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2GZ7
Asym. Unit
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Asym.Unit (59 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
STRUCTURE-BASED DRUG DESIGN AND STRUCTURAL BIOLOGY STUDY OF NOVEL NONPEPTIDE INHIBITORS OF SARS-COV MAIN PROTEASE
Authors
:
I. L. Lu, S. Y. Wu
Date
:
11 May 06 (Deposition) - 29 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Sars Cov Main Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. L. Lu, N. Mahindroo, P. H. Liang, Y. H. Peng, C. J. Kuo, K. C. Tsai, H. P. Hsieh, Y. S. Chao, S. Y. Wu
Structure-Based Drug Design And Structural Biology Study Of Novel Nonpeptide Inhibitors Of Severe Acute Respiratory Syndrome Coronavirus Main Protease
J. Med. Chem. V. 49 5154 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-[(2,4-DICHLORO-5-METHYLPHENYL)SU... (D3Fa)
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No.
Name
Count
Type
Full Name
1
D3F
1
Ligand/Ion
2-[(2,4-DICHLORO-5-METHYLPHENYL)SULFONYL]-1,3-DINITRO-5-(TRIFLUOROMETHYL)BENZENE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:27 , PRO A:39 , HIS A:41 , CYS A:145 , HIS A:164 , MET A:165 , GLU A:166 , ARG A:188 , THR A:190 , GLN A:192 , HOH A:382 , HOH A:422 , HOH A:553 , HOH A:568
BINDING SITE FOR RESIDUE D3F A 307
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_R1AB_CVHSA_047 (Q189P, chain A, )
2: VAR_R1A_CVHSA_047 (Q189P, chain A, )
3: VAR_R1AB_CVHSA_048 (D248E, chain A, )
4: VAR_R1A_CVHSA_048 (D248E, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_047
*
Q
3429
P
R1AB_CVHSA
---
---
A
Q
189
P
2
UniProt
VAR_R1A_CVHSA_047
*
Q
3429
P
R1A_CVHSA
---
---
A
Q
189
P
3
UniProt
VAR_R1AB_CVHSA_048
*
D
3488
E
R1AB_CVHSA
---
---
A
D
248
E
4
UniProt
VAR_R1A_CVHSA_048
*
D
3488
E
R1A_CVHSA
---
---
A
D
248
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:1-306,A:1-306)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1A_CVHSA
3241-3546
1
A:1-306
R1AB_CVHSA
3241-3546
1
A:1-306
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2gz7a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
SARS coronavirus [TaxId: 227859]
(65)
1a
d2gz7a_
A:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2gz7A03 (A:198-301)
2a: CATH_2gz7A01 (A:1-14,A:100-197)
2b: CATH_2gz7A02 (A:15-99)
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)
Organisms
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)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
main proteinase (3clpro) structure, domain 3
(38)
Homologous Superfamily
:
main proteinase (3clpro) structure, domain 3
(38)
Sars coronavirus. Organism_taxid: 227859. Strain: sars.
(11)
1a
2gz7A03
A:198-301
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Sars coronavirus. Organism_taxid: 227859. Strain: sars.
(11)
2a
2gz7A01
A:1-14,A:100-197
2b
2gz7A02
A:15-99
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (59 KB)
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