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2GZ3
Biol. Unit 3
Info
Asym.Unit (455 KB)
Biol.Unit 1 (447 KB)
Biol.Unit 2 (224 KB)
Biol.Unit 3 (228 KB)
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(1)
Title
:
STRUCTURE OF ASPARTATE SEMIALDEHYDE DEHYDROGENASE (ASADH) FROM STREPTOCOCCUS PNEUMONIAE COMPLEXED WITH NADP AND ASPARTATE-SEMIALDEHYDE
Authors
:
C. R. Faehnle, J. Le Coq, X. Liu, R. E. Viola
Date
:
10 May 06 (Deposition) - 15 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Dehydrogenase, Aspartate Pathway, Oxidoreductase
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Reference
:
C. R. Faehnle, J. Le Coq, X. Liu, R. E. Viola
Examination Of Key Intermediates In The Catalytic Cycle Of Aspartate-Beta-Semialdehyde Dehydrogenase From A Gram-Positive Infectious Bacteria.
J. Biol. Chem. V. 281 31031 2006
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: (2R)-2-AMINO-4-OXOBUTANOIC ACID (AS2a)
1b: (2R)-2-AMINO-4-OXOBUTANOIC ACID (AS2b)
1c: (2R)-2-AMINO-4-OXOBUTANOIC ACID (AS2c)
1d: (2R)-2-AMINO-4-OXOBUTANOIC ACID (AS2d)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
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No.
Name
Count
Type
Full Name
1
AS2
1
Ligand/Ion
(2R)-2-AMINO-4-OXOBUTANOIC ACID
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY B:9 , THR B:11 , GLY B:12 , ALA B:13 , VAL B:14 , ALA B:36 , SER B:37 , SER B:40 , THR B:57 , SER B:71 , ALA B:72 , GLY B:73 , THR B:76 , ASN B:94 , SER B:158 , GLY B:159 , GLY B:161 , MET B:162 , ASN B:325 , LEU B:326 , AS2 B:400 , HOH B:442 , HOH B:467 , HOH B:512 , LYS D:86
BINDING SITE FOR RESIDUE NAP B 367
2
AC5
SOFTWARE
LYS A:86 , GLY C:9 , THR C:11 , GLY C:12 , ALA C:13 , VAL C:14 , ALA C:36 , SER C:37 , ARG C:39 , SER C:40 , THR C:57 , SER C:71 , ALA C:72 , GLY C:73 , THR C:76 , ASN C:94 , THR C:95 , SER C:158 , GLY C:159 , GLY C:161 , MET C:162 , LEU C:326 , AS2 C:400 , HOH C:500
BINDING SITE FOR RESIDUE NAP C 367
3
AC6
SOFTWARE
ASN C:127 , CYS C:128 , GLN C:155 , GLY C:159 , ILE C:209 , GLU C:220 , ARG C:245 , HIS C:252 , NAP C:367
BINDING SITE FOR RESIDUE AS2 C 400
4
AC7
SOFTWARE
GLY D:9 , THR D:11 , GLY D:12 , ALA D:13 , VAL D:14 , ALA D:36 , SER D:37 , ARG D:39 , SER D:40 , THR D:57 , SER D:71 , ALA D:72 , GLY D:73 , SER D:74 , THR D:76 , ASN D:94 , THR D:95 , SER D:158 , GLY D:159 , GLY D:161 , MET D:162 , ASN D:325 , LEU D:326 , GLY D:329 , ALA D:330 , AS2 D:400 , HOH D:539 , HOH D:540
BINDING SITE FOR RESIDUE NAP D 367
5
AC8
SOFTWARE
ASN D:127 , CYS D:128 , GLN D:155 , GLY D:159 , ILE D:209 , GLU D:220 , ARG D:245 , HIS D:252 , NAP D:367
BINDING SITE FOR RESIDUE AS2 D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2gz3a2 (A:128-329)
1b: SCOP_d2gz3b2 (B:128-329)
1c: SCOP_d2gz3c2 (C:128-329)
1d: SCOP_d2gz3d2 (D:128-329)
2a: SCOP_d2gz3a1 (A:2-127,A:330-358)
2b: SCOP_d2gz3b1 (B:2-127,B:330-348)
2c: SCOP_d2gz3c1 (C:2-127,C:330-358)
2d: SCOP_d2gz3d1 (D:2-127,D:330-358)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(11)
1a
d2gz3a2
A:128-329
1b
d2gz3b2
B:128-329
1c
d2gz3c2
C:128-329
1d
d2gz3d2
D:128-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(11)
2a
d2gz3a1
A:2-127,A:330-358
2b
d2gz3b1
B:2-127,B:330-348
2c
d2gz3c1
C:2-127,C:330-358
2d
d2gz3d1
D:2-127,D:330-358
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (455 KB)
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Biol.Unit 1 (447 KB)
Header - Biol.Unit 1
Biol.Unit 2 (224 KB)
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Biol.Unit 3 (228 KB)
Header - Biol.Unit 3
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