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2GYO
Asym. Unit
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Asym.Unit (107 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
METHANETHIOL-CYS 112 INHIBITION COMPLEX OF E. COLI KETOACYL SYNTHASE III (FABH) AND COENZYME A
Authors
:
M. M. Alhamadsheh, F. Musayev, A. A. Komissarov, S. Sachdeva, H. T. Wrig N. Scarsdale, G. Florova, K. A. Reynolds
Date
:
09 May 06 (Deposition) - 05 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fatty Acid Biosynthesis, Alkyl-Coa-Disulfide, Mechanism-Based Inhibitor, Mycobacterium Tuberculosis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. M. Alhamadsheh, F. Musayev, A. A. Komissarov, S. Sachdeva, H. T. Wright, N. Scarsdale, G. Florova, K. A. Reynolds
Alkyl-Coa Disulfides As Inhibitors And Mechanistic Probes For Fabh Enzymes.
Chem. Biol. V. 14 513 2007
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: COENZYME A (COAa)
2a: METHANETHIOL (MEEa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
COA
1
Ligand/Ion
COENZYME A
2
MEE
1
Ligand/Ion
METHANETHIOL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:125 , ALA A:130 , THR B:177 , LEU B:179 , HOH B:534
BINDING SITE FOR RESIDUE SO4 B 318
2
AC2
SOFTWARE
LYS B:4 , SER B:169 , GLU B:170 , GLU B:171 , HOH B:417
BINDING SITE FOR RESIDUE SO4 B 319
3
AC3
SOFTWARE
THR A:28 , TRP A:32 , ARG A:36 , ARG A:151 , MET A:207 , GLY A:209 , ASN A:210 , PHE A:213 , ALA A:246 , ASN A:247 , ARG A:249 , ASN A:274 , PHE A:304 , HOH A:490 , HOH A:497 , MEE A:963 , ARG B:40
BINDING SITE FOR RESIDUE COA A 962
4
AC4
SOFTWARE
ALA A:111 , CYS A:112 , GLY A:306 , COA A:962 , PHE B:87
BINDING SITE FOR RESIDUE MEE A 963
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2gyoa1 (A:1-174)
1b: SCOP_d2gyoa2 (A:175-317)
1c: SCOP_d2gyob1 (B:1-174)
1d: SCOP_d2gyob2 (B:175-317)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Chalcone synthase-like
(56)
Protein domain
:
Ketoacyl-ACP synthase III (FabH)
(22)
Escherichia coli [TaxId: 562]
(9)
1a
d2gyoa1
A:1-174
1b
d2gyoa2
A:175-317
1c
d2gyob1
B:1-174
1d
d2gyob2
B:175-317
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2gyoA01 (A:1-170)
1b: CATH_2gyoA02 (A:171-317)
1c: CATH_2gyoB02 (B:171-317)
1d: CATH_2gyoB01 (B:1-170)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(5)
1a
2gyoA01
A:1-170
1b
2gyoA02
A:171-317
1c
2gyoB02
B:171-317
1d
2gyoB01
B:1-170
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (107 KB)
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