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2GXA
Biol. Unit 2
Info
Asym.Unit (504 KB)
Biol.Unit 1 (249 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASE WITH SSDNA AND MGADP
Authors
:
E. J. Enemark, L. Joshua-Tor
Date
:
08 May 06 (Deposition) - 25 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,M (1x)
Biol. Unit 2: G,H,I,J,K,L,N (1x)
Keywords
:
Dna Helicase, Aaa+, Atpase, Replication, Virus, Initiator Protein, Replication/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Enemark, L. Joshua-Tor
Mechanism Of Dna Translocation In A Replicative Hexameric Helicase.
Nature V. 442 270 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(11, 11)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC4 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ADP G:7 , HOH G:10 , HOH G:11 , HOH G:12 , SER G:440 , ASP G:479 , ARG H:538
BINDING SITE FOR RESIDUE MG G 27
02
AC7
SOFTWARE
ADP H:8 , HOH H:13 , HOH H:14 , CL H:48 , SER H:440 , ASP H:479 , HOH I:15 , ARG I:538
BINDING SITE FOR RESIDUE MG H 28
03
AC8
SOFTWARE
SER I:440 , ASP I:479 , ADP J:9
BINDING SITE FOR RESIDUE MG I 29
04
AC9
SOFTWARE
SER J:440 , ASP J:479 , ADP K:10
BINDING SITE FOR RESIDUE MG J 30
05
BC1
SOFTWARE
SER K:440 , ASP K:479 , ADP L:11
BINDING SITE FOR RESIDUE MG K 31
06
BC4
SOFTWARE
ADP H:8 , MG H:28 , PRO H:435 , LYS H:439 , ASP H:479 , ASN H:523
BINDING SITE FOR RESIDUE CL H 48
07
CC2
SOFTWARE
HOH G:10 , HOH G:11 , MG G:27 , ASN G:436 , THR G:437 , GLY G:438 , LYS G:439 , SER G:440 , MET G:441 , ASN G:558 , LYS H:425 , TYR H:499
BINDING SITE FOR RESIDUE ADP G 7
08
CC3
SOFTWARE
HOH H:14 , MG H:28 , CL H:48 , ASN H:436 , THR H:437 , GLY H:438 , LYS H:439 , SER H:440 , MET H:441 , ASN H:558 , PRO I:424 , LYS I:425 , TYR I:499
BINDING SITE FOR RESIDUE ADP H 8
09
CC4
SOFTWARE
MG I:29 , ASN I:436 , THR I:437 , GLY I:438 , LYS I:439 , SER I:440 , MET I:441 , GLN I:555 , TYR J:499
BINDING SITE FOR RESIDUE ADP J 9
10
CC5
SOFTWARE
MG J:30 , ASN J:436 , THR J:437 , GLY J:438 , LYS J:439 , SER J:440 , MET J:441 , CYS J:548 , ASP J:550 , ASP K:497 , TYR K:499
BINDING SITE FOR RESIDUE ADP K 10
11
CC6
SOFTWARE
MG K:31 , PRO K:435 , ASN K:436 , THR K:437 , GLY K:438 , LYS K:439 , SER K:440 , ASP K:479 , ASP L:489 , THR L:490 , ARG L:493
BINDING SITE FOR RESIDUE ADP L 11
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SF3_HELICASE_1 (G:407-557,H:407-557,I:407-557,J:40...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SF3_HELICASE_1
PS51206
Superfamily 3 helicase of DNA viruses domain profile.
VE1_BPV1
407-557
6
-
-
-
-
-
-
G:407-557
H:407-557
I:407-557
J:407-557
K:407-557
L:407-557
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2gxaA02 (A:377-577)
1b: CATH_2gxaB02 (B:377-577)
1c: CATH_2gxaC02 (C:377-577)
1d: CATH_2gxaD02 (D:377-577)
1e: CATH_2gxaE02 (E:377-577)
1f: CATH_2gxaF02 (F:377-577)
1g: CATH_2gxaG02 (G:377-577)
1h: CATH_2gxaH02 (H:377-577)
1i: CATH_2gxaI02 (I:377-577)
1j: CATH_2gxaJ02 (J:377-577)
1k: CATH_2gxaK02 (K:377-577)
1l: CATH_2gxaL02 (L:377-577)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
1a
2gxaA02
A:377-577
1b
2gxaB02
B:377-577
1c
2gxaC02
C:377-577
1d
2gxaD02
D:377-577
1e
2gxaE02
E:377-577
1f
2gxaF02
F:377-577
1g
2gxaG02
G:377-577
1h
2gxaH02
H:377-577
1i
2gxaI02
I:377-577
1j
2gxaJ02
J:377-577
1k
2gxaK02
K:377-577
1l
2gxaL02
L:377-577
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Pfam Domains
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Chain K
Chain L
Chain N
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (504 KB)
Header - Asym.Unit
Biol.Unit 1 (249 KB)
Header - Biol.Unit 1
Biol.Unit 2 (250 KB)
Header - Biol.Unit 2
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