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2GXA
Asym. Unit
Info
Asym.Unit (504 KB)
Biol.Unit 1 (249 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASE WITH SSDNA AND MGADP
Authors
:
E. J. Enemark, L. Joshua-Tor
Date
:
08 May 06 (Deposition) - 25 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,M (1x)
Biol. Unit 2: G,H,I,J,K,L,N (1x)
Keywords
:
Dna Helicase, Aaa+, Atpase, Replication, Virus, Initiator Protein, Replication/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Enemark, L. Joshua-Tor
Mechanism Of Dna Translocation In A Replicative Hexameric Helicase.
Nature V. 442 270 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
11
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
MG
10
Ligand/Ion
MAGNESIUM ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ADP A:1 , SER A:440 , ASP A:479 , HOH A:578 , HOH A:579 , HOH B:3 , ARG B:538
BINDING SITE FOR RESIDUE MG A 21
02
AC2
SOFTWARE
ADP B:2 , HOH B:4 , HOH B:6 , SER B:440 , ASP B:479 , HOH C:5 , ARG C:538
BINDING SITE FOR RESIDUE MG B 22
03
AC3
SOFTWARE
ADP C:3 , HOH C:7 , HOH C:8 , SER C:440 , ASP C:479 , HOH D:9 , ARG D:538
BINDING SITE FOR RESIDUE MG C 23
04
AC4
SOFTWARE
ADP D:4 , SER D:440 , ASP D:479 , TYR E:534
BINDING SITE FOR RESIDUE MG D 24
05
AC5
SOFTWARE
ADP E:5 , SER E:440 , ASP E:479
BINDING SITE FOR RESIDUE MG E 25
06
AC6
SOFTWARE
ADP G:7 , HOH G:10 , HOH G:11 , HOH G:12 , SER G:440 , ASP G:479 , ARG H:538
BINDING SITE FOR RESIDUE MG G 27
07
AC7
SOFTWARE
ADP H:8 , HOH H:13 , HOH H:14 , CL H:48 , SER H:440 , ASP H:479 , HOH I:15 , ARG I:538
BINDING SITE FOR RESIDUE MG H 28
08
AC8
SOFTWARE
SER I:440 , ASP I:479 , ADP J:9
BINDING SITE FOR RESIDUE MG I 29
09
AC9
SOFTWARE
SER J:440 , ASP J:479 , ADP K:10
BINDING SITE FOR RESIDUE MG J 30
10
BC1
SOFTWARE
SER K:440 , ASP K:479 , ADP L:11
BINDING SITE FOR RESIDUE MG K 31
11
BC2
SOFTWARE
ADP A:1 , LYS A:439 , ARG B:538
BINDING SITE FOR RESIDUE CL A 41
12
BC3
SOFTWARE
ADP B:2 , LYS B:439 , ASN B:523
BINDING SITE FOR RESIDUE CL B 42
13
BC4
SOFTWARE
ADP H:8 , MG H:28 , PRO H:435 , LYS H:439 , ASP H:479 , ASN H:523
BINDING SITE FOR RESIDUE CL H 48
14
BC5
SOFTWARE
MG A:21 , CL A:41 , ASN A:436 , THR A:437 , GLY A:438 , LYS A:439 , SER A:440 , MET A:441 , ASN A:558 , HOH A:578 , HOH A:579 , ILE B:423 , PRO B:424 , LYS B:425 , LYS B:426 , TYR B:499
BINDING SITE FOR RESIDUE ADP A 1
15
BC6
SOFTWARE
HOH B:4 , MG B:22 , CL B:42 , ASN B:436 , THR B:437 , GLY B:438 , LYS B:439 , SER B:440 , MET B:441 , ASN B:558 , HOH C:5 , PRO C:424 , LYS C:425 , LYS C:426 , TYR C:499
BINDING SITE FOR RESIDUE ADP B 2
16
BC7
SOFTWARE
HOH C:7 , HOH C:8 , MG C:23 , ASN C:436 , THR C:437 , GLY C:438 , LYS C:439 , SER C:440 , MET C:441 , THR C:549 , ASN C:558 , PRO D:424 , LYS D:425 , TYR D:499
BINDING SITE FOR RESIDUE ADP C 3
17
BC8
SOFTWARE
MG D:24 , ASN D:436 , THR D:437 , GLY D:438 , LYS D:439 , SER D:440 , THR D:549 , GLN D:555 , TYR E:499 , TYR E:534
BINDING SITE FOR RESIDUE ADP D 4
18
BC9
SOFTWARE
MG E:25 , ASN E:436 , THR E:437 , GLY E:438 , LYS E:439 , SER E:440 , MET E:441 , TYR F:499
BINDING SITE FOR RESIDUE ADP E 5
19
CC1
SOFTWARE
PRO F:435 , ASN F:436 , THR F:437 , GLY F:438 , LYS F:439 , SER F:440 , MET F:441 , ASP F:479 , ASN F:523 , CYS F:548 , PHE F:557
BINDING SITE FOR RESIDUE ADP F 6
20
CC2
SOFTWARE
HOH G:10 , HOH G:11 , MG G:27 , ASN G:436 , THR G:437 , GLY G:438 , LYS G:439 , SER G:440 , MET G:441 , ASN G:558 , LYS H:425 , TYR H:499
BINDING SITE FOR RESIDUE ADP G 7
21
CC3
SOFTWARE
HOH H:14 , MG H:28 , CL H:48 , ASN H:436 , THR H:437 , GLY H:438 , LYS H:439 , SER H:440 , MET H:441 , ASN H:558 , PRO I:424 , LYS I:425 , TYR I:499
BINDING SITE FOR RESIDUE ADP H 8
22
CC4
SOFTWARE
MG I:29 , ASN I:436 , THR I:437 , GLY I:438 , LYS I:439 , SER I:440 , MET I:441 , GLN I:555 , TYR J:499
BINDING SITE FOR RESIDUE ADP J 9
23
CC5
SOFTWARE
MG J:30 , ASN J:436 , THR J:437 , GLY J:438 , LYS J:439 , SER J:440 , MET J:441 , CYS J:548 , ASP J:550 , ASP K:497 , TYR K:499
BINDING SITE FOR RESIDUE ADP K 10
24
CC6
SOFTWARE
MG K:31 , PRO K:435 , ASN K:436 , THR K:437 , GLY K:438 , LYS K:439 , SER K:440 , ASP K:479 , ASP L:489 , THR L:490 , ARG L:493
BINDING SITE FOR RESIDUE ADP L 11
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: SF3_HELICASE_1 (A:407-557,B:407-557,C:407-557,D:40...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SF3_HELICASE_1
PS51206
Superfamily 3 helicase of DNA viruses domain profile.
VE1_BPV1
407-557
12
A:407-557
B:407-557
C:407-557
D:407-557
E:407-557
F:407-557
G:407-557
H:407-557
I:407-557
J:407-557
K:407-557
L:407-557
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2gxaA02 (A:377-577)
1b: CATH_2gxaB02 (B:377-577)
1c: CATH_2gxaC02 (C:377-577)
1d: CATH_2gxaD02 (D:377-577)
1e: CATH_2gxaE02 (E:377-577)
1f: CATH_2gxaF02 (F:377-577)
1g: CATH_2gxaG02 (G:377-577)
1h: CATH_2gxaH02 (H:377-577)
1i: CATH_2gxaI02 (I:377-577)
1j: CATH_2gxaJ02 (J:377-577)
1k: CATH_2gxaK02 (K:377-577)
1l: CATH_2gxaL02 (L:377-577)
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Classes
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
1a
2gxaA02
A:377-577
1b
2gxaB02
B:377-577
1c
2gxaC02
C:377-577
1d
2gxaD02
D:377-577
1e
2gxaE02
E:377-577
1f
2gxaF02
F:377-577
1g
2gxaG02
G:377-577
1h
2gxaH02
H:377-577
1i
2gxaI02
I:377-577
1j
2gxaJ02
J:377-577
1k
2gxaK02
K:377-577
1l
2gxaL02
L:377-577
[
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Pfam Domains
(0, 0)
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all PFAM domains
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