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2GX2
Asym. Unit
Info
Asym.Unit (473 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 10 (45 KB)
Biol.Unit 11 (45 KB)
Biol.Unit 12 (45 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (45 KB)
Biol.Unit 5 (47 KB)
Biol.Unit 6 (46 KB)
Biol.Unit 7 (46 KB)
Biol.Unit 8 (46 KB)
Biol.Unit 9 (45 KB)
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Title
:
CRYSTAL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GFP-LIKE FLUORESCENT PROTEIN DRONPA
Authors
:
K. Y. Hwang, K. -H. Nam, S. -Y. Park, K. Sugiyama
Date
:
08 May 06 (Deposition) - 08 May 07 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Photoswiching, Fluorescence Protein, Luminescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -H. Nam, O. Y. Kwon, K. Sugiyama, W. -H. Lee, Y. K. Kim, H. K. Song, E. E. Kim, S. -Y. Park, H. Jeon, K. Y. Hwang
Structural Characterization Of The Photoswitchable Fluorescent Protein Dronpa-C62S
Biochem. Biophys. Res. Commun. V. 354 962 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 74)
Info
All Hetero Components
1a: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSa)
1b: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSb)
1c: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSc)
1d: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSd)
1e: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSe)
1f: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSf)
1g: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSg)
1h: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSh)
1i: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSi)
1j: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSj)
1k: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSk)
1l: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSl)
2a: MAGNESIUM ION (MGa)
2aa: MAGNESIUM ION (MGaa)
2ab: MAGNESIUM ION (MGab)
2ac: MAGNESIUM ION (MGac)
2ad: MAGNESIUM ION (MGad)
2ae: MAGNESIUM ION (MGae)
2af: MAGNESIUM ION (MGaf)
2ag: MAGNESIUM ION (MGag)
2ah: MAGNESIUM ION (MGah)
2ai: MAGNESIUM ION (MGai)
2aj: MAGNESIUM ION (MGaj)
2ak: MAGNESIUM ION (MGak)
2al: MAGNESIUM ION (MGal)
2am: MAGNESIUM ION (MGam)
2an: MAGNESIUM ION (MGan)
2ao: MAGNESIUM ION (MGao)
2ap: MAGNESIUM ION (MGap)
2aq: MAGNESIUM ION (MGaq)
2ar: MAGNESIUM ION (MGar)
2as: MAGNESIUM ION (MGas)
2at: MAGNESIUM ION (MGat)
2au: MAGNESIUM ION (MGau)
2av: MAGNESIUM ION (MGav)
2aw: MAGNESIUM ION (MGaw)
2ax: MAGNESIUM ION (MGax)
2ay: MAGNESIUM ION (MGay)
2az: MAGNESIUM ION (MGaz)
2b: MAGNESIUM ION (MGb)
2ba: MAGNESIUM ION (MGba)
2bb: MAGNESIUM ION (MGbb)
2bc: MAGNESIUM ION (MGbc)
2bd: MAGNESIUM ION (MGbd)
2be: MAGNESIUM ION (MGbe)
2bf: MAGNESIUM ION (MGbf)
2bg: MAGNESIUM ION (MGbg)
2bh: MAGNESIUM ION (MGbh)
2bi: MAGNESIUM ION (MGbi)
2bj: MAGNESIUM ION (MGbj)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
2z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GYS
12
Mod. Amino Acid
[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2
MG
62
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(61, 61)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:205 , HOH A:3109
BINDING SITE FOR RESIDUE MG A 3025
02
AC2
SOFTWARE
ALA A:17 , HOH A:3127 , HOH L:3070 , HOH L:3137
BINDING SITE FOR RESIDUE MG A 3026
03
AC3
SOFTWARE
HOH A:3102 , HOH A:3177 , HOH L:3160 , HOH L:3161 , HOH L:3163
BINDING SITE FOR RESIDUE MG A 3027
04
AC4
SOFTWARE
PRO A:130 , HOH A:3096 , HOH E:3131
BINDING SITE FOR RESIDUE MG A 3031
05
AC5
SOFTWARE
HOH A:3103 , HOH A:3180 , HOH H:3209
BINDING SITE FOR RESIDUE MG A 3033
06
AC6
SOFTWARE
HIS A:216 , SER A:217 , HOH H:3169
BINDING SITE FOR RESIDUE MG A 3052
07
AC7
SOFTWARE
HOH B:3235
BINDING SITE FOR RESIDUE MG B 3029
08
AC8
SOFTWARE
ALA B:127 , HOH B:3109 , HOH G:3209
BINDING SITE FOR RESIDUE MG B 3037
09
AC9
SOFTWARE
ILE B:115 , HOH B:3128
BINDING SITE FOR RESIDUE MG B 3041
10
BC1
SOFTWARE
HOH B:3139 , HOH G:3084 , HOH G:3124
BINDING SITE FOR RESIDUE MG B 3042
11
BC2
SOFTWARE
HOH B:3095 , HOH B:3227
BINDING SITE FOR RESIDUE MG B 3043
12
BC3
SOFTWARE
HOH B:3189 , HOH B:3220 , HOH G:3148 , HOH G:3174
BINDING SITE FOR RESIDUE MG B 3044
13
BC4
SOFTWARE
VAL B:152 , HOH B:3125 , HOH B:3195
BINDING SITE FOR RESIDUE MG B 3046
14
BC5
SOFTWARE
LYS B:138 , HOH B:3069
BINDING SITE FOR RESIDUE MG B 3047
15
BC6
SOFTWARE
HOH C:3056
BINDING SITE FOR RESIDUE MG C 3003
16
BC7
SOFTWARE
LEU C:163 , TYR C:169 , HOH C:3100 , HOH C:3185 , HOH C:3221 , HOH C:3234
BINDING SITE FOR RESIDUE MG C 3004
17
BC8
SOFTWARE
HOH C:3129 , HOH F:3074 , HOH F:3105
BINDING SITE FOR RESIDUE MG C 3010
18
BC9
SOFTWARE
LYS C:174 , HOH F:3136 , HOH F:3149
BINDING SITE FOR RESIDUE MG C 3012
19
CC1
SOFTWARE
HOH C:3084 , HOH G:3175
BINDING SITE FOR RESIDUE MG C 3014
20
CC2
SOFTWARE
SER C:88 , ASP C:106 , HOH C:3090 , HOH F:3141
BINDING SITE FOR RESIDUE MG C 3016
21
CC3
SOFTWARE
TYR C:147 , LYS C:174
BINDING SITE FOR RESIDUE MG C 3039
22
CC4
SOFTWARE
ASP C:150 , HOH C:3102 , HOH C:3199
BINDING SITE FOR RESIDUE MG C 3048
23
CC5
SOFTWARE
HOH D:3119 , HOH I:3033 , HOH I:3070
BINDING SITE FOR RESIDUE MG D 3007
24
CC6
SOFTWARE
PRO D:51 , MET D:132 , HOH D:3077 , HOH D:3146
BINDING SITE FOR RESIDUE MG D 3009
25
CC7
SOFTWARE
ALA D:127 , HOH D:3074 , HOH D:3077 , HOH D:3139
BINDING SITE FOR RESIDUE MG D 3011
26
CC8
SOFTWARE
HOH D:3096 , HOH D:3138 , GLU H:46 , HOH H:3143
BINDING SITE FOR RESIDUE MG D 3013
27
CC9
SOFTWARE
HOH D:3071 , HOH D:3167 , HOH I:3137 , HOH I:3147 , HOH I:3149 , HOH I:3150
BINDING SITE FOR RESIDUE MG D 3018
28
DC1
SOFTWARE
LYS D:138 , GLU D:140
BINDING SITE FOR RESIDUE MG D 3020
29
DC2
SOFTWARE
HOH D:3091 , HOH E:3245
BINDING SITE FOR RESIDUE MG D 3021
30
DC3
SOFTWARE
HOH E:3115 , HOH E:3226 , HOH J:3057
BINDING SITE FOR RESIDUE MG E 3001
31
DC4
SOFTWARE
ILE E:115
BINDING SITE FOR RESIDUE MG E 3002
32
DC5
SOFTWARE
GLY D:167 , HOH D:3049 , HOH D:3133 , HOH E:3239
BINDING SITE FOR RESIDUE MG E 3023
33
DC6
SOFTWARE
GLU E:35 , HOH E:3098
BINDING SITE FOR RESIDUE MG E 3024
34
DC7
SOFTWARE
HOH E:3124 , HOH E:3222
BINDING SITE FOR RESIDUE MG E 3030
35
DC8
SOFTWARE
HOH E:3242 , HOH E:3243 , HOH E:3272 , HOH E:3273 , HOH J:3080 , HOH J:3147
BINDING SITE FOR RESIDUE MG E 3061
36
DC9
SOFTWARE
ASP F:150 , HOH F:3216
BINDING SITE FOR RESIDUE MG F 3006
37
EC1
SOFTWARE
HOH C:3121 , HOH C:3206 , LYS F:174
BINDING SITE FOR RESIDUE MG F 3008
38
EC2
SOFTWARE
HOH C:3131 , ALA F:127 , HOH F:3119
BINDING SITE FOR RESIDUE MG F 3045
39
EC3
SOFTWARE
HOH F:3066
BINDING SITE FOR RESIDUE MG F 3056
40
EC4
SOFTWARE
GLY F:111 , HOH F:3226
BINDING SITE FOR RESIDUE MG F 3063
41
EC5
SOFTWARE
HOH B:3195 , HOH G:3122 , HOH G:3168 , HOH G:3254
BINDING SITE FOR RESIDUE MG G 3040
42
EC6
SOFTWARE
LYS G:138 , HOH G:3098
BINDING SITE FOR RESIDUE MG G 3057
43
EC7
SOFTWARE
HOH F:3228 , HOH G:3153 , HOH G:3211
BINDING SITE FOR RESIDUE MG G 3058
44
EC8
SOFTWARE
HOH A:3065 , HOH A:3163 , VAL H:148 , HOH H:3206
BINDING SITE FOR RESIDUE MG H 3032
45
EC9
SOFTWARE
HOH A:3110 , HOH A:3181 , ASP H:156 , LYS H:174
BINDING SITE FOR RESIDUE MG H 3038
46
FC1
SOFTWARE
ARG H:135 , GLY H:165 , HOH H:3142
BINDING SITE FOR RESIDUE MG H 3054
47
FC2
SOFTWARE
HOH H:3126 , HOH H:3215
BINDING SITE FOR RESIDUE MG H 3060
48
FC3
SOFTWARE
HOH D:3031 , HOH D:3098 , ALA I:17 , HOH I:3140
BINDING SITE FOR RESIDUE MG I 3005
49
FC4
SOFTWARE
HOH D:3068 , HOH D:3089 , HOH D:3159 , HOH I:3040 , HOH I:3141 , HOH I:3142
BINDING SITE FOR RESIDUE MG I 3015
50
FC5
SOFTWARE
HOH D:3084 , LYS I:174
BINDING SITE FOR RESIDUE MG I 3019
51
FC6
SOFTWARE
ALA I:127
BINDING SITE FOR RESIDUE MG I 3022
52
FC7
SOFTWARE
HOH E:3136 , HOH E:3232 , HOH J:3085 , HOH J:3128
BINDING SITE FOR RESIDUE MG J 3017
53
FC8
SOFTWARE
ASP K:150 , HOH K:3156
BINDING SITE FOR RESIDUE MG K 3035
54
FC9
SOFTWARE
HOH H:3163 , HOH K:3126
BINDING SITE FOR RESIDUE MG K 3036
55
GC1
SOFTWARE
HOH H:3081 , HOH H:3095 , HOH K:3145
BINDING SITE FOR RESIDUE MG K 3049
56
GC2
SOFTWARE
ALA K:127 , MET K:132 , HOH K:3070
BINDING SITE FOR RESIDUE MG K 3050
57
GC3
SOFTWARE
HIS K:21 , HOH K:3131
BINDING SITE FOR RESIDUE MG K 3051
58
GC4
SOFTWARE
LYS K:138 , GLU K:140
BINDING SITE FOR RESIDUE MG K 3053
59
GC5
SOFTWARE
HOH A:3159 , LYS L:174
BINDING SITE FOR RESIDUE MG L 3028
60
GC6
SOFTWARE
HOH A:3082 , HOH A:3106 , HOH L:3078 , HOH L:3164 , HOH L:3165 , HOH L:3166
BINDING SITE FOR RESIDUE MG L 3034
61
GC7
SOFTWARE
HOH L:3138
BINDING SITE FOR RESIDUE MG L 3055
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2gx2a_ (A:)
1b: SCOP_d2gx2b_ (B:)
1c: SCOP_d2gx2c_ (C:)
1d: SCOP_d2gx2d_ (D:)
1e: SCOP_d2gx2e_ (E:)
1f: SCOP_d2gx2f_ (F:)
1g: SCOP_d2gx2g_ (G:)
1h: SCOP_d2gx2h_ (H:)
1i: SCOP_d2gx2i_ (I:)
1j: SCOP_d2gx2j_ (J:)
1k: SCOP_d2gx2k_ (K:)
1l: SCOP_d2gx2l_ (L:)
View:
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
automated matches
(66)
Protein domain
:
automated matches
(66)
Echinophyllia sp. [TaxId: 301887]
(12)
1a
d2gx2a_
A:
1b
d2gx2b_
B:
1c
d2gx2c_
C:
1d
d2gx2d_
D:
1e
d2gx2e_
E:
1f
d2gx2f_
F:
1g
d2gx2g_
G:
1h
d2gx2h_
H:
1i
d2gx2i_
I:
1j
d2gx2j_
J:
1k
d2gx2k_
K:
1l
d2gx2l_
L:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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Asym.Unit (473 KB)
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Biol.Unit 10 (45 KB)
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Biol.Unit 11 (45 KB)
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Biol.Unit 12 (45 KB)
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