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2GWQ
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (14 KB)
Biol.Unit 2 (14 KB)
Biol.Unit 3 (14 KB)
Biol.Unit 4 (14 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D(G4T4G4) WITH FOUR QUADRUPLEXES IN THE ASYMMETRIC UNIT.
Authors
:
M. P. H. Lee, G. N. Parkinson, S. Neidle
Date
:
05 May 06 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Oxytricha, G-Quartet, G-Quadruplex, G-Tetrad, G-Tetraplex, Four Quadruplexes, Asymmetric Unit. , Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. P. H. Lee, S. Haider, G. N. Parkinson, S. Neidle
Crystal Structure Of D(G4T4G4) With Four And Six Quadruplexes In The Asymmetric Unit.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 20)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
1p: POTASSIUM ION (Kp)
1q: POTASSIUM ION (Kq)
1r: POTASSIUM ION (Kr)
1s: POTASSIUM ION (Ks)
1t: POTASSIUM ION (Kt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
20
Ligand/Ion
POTASSIUM ION
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DG C:28 , DT C:29 , DT C:31 , DG C:33 , HOH C:129 , HOH C:131 , DG D:37 , DG D:48 , K D:98
BINDING SITE FOR RESIDUE K C 97
02
AC2
SOFTWARE
DG C:27 , DG C:28 , DG C:33 , DG C:34 , K C:97 , DG D:37 , DG D:38 , DG D:47 , DG D:48 , K D:99
BINDING SITE FOR RESIDUE K D 98
03
AC3
SOFTWARE
DG C:26 , DG C:27 , DG C:34 , DG C:35 , K C:100 , DG D:38 , DG D:39 , DG D:46 , DG D:47 , K D:98
BINDING SITE FOR RESIDUE K D 99
04
AC4
SOFTWARE
DG C:25 , DG C:26 , DG C:35 , DG C:36 , DG D:39 , DG D:40 , DG D:45 , DG D:46 , K D:99 , K D:101
BINDING SITE FOR RESIDUE K C 100
05
AC5
SOFTWARE
DG C:25 , DG C:36 , K C:100 , DG D:40 , DT D:41 , DT D:43 , DG D:45 , HOH D:139 , HOH D:186
BINDING SITE FOR RESIDUE K D 101
06
AC6
SOFTWARE
DG A:4 , DT A:5 , DT A:7 , DG A:9 , K A:103 , HOH A:117 , HOH A:118 , DG B:13 , DG B:24
BINDING SITE FOR RESIDUE K A 102
07
AC7
SOFTWARE
DG A:3 , DG A:4 , DG A:9 , DG A:10 , K A:102 , K A:104 , DG B:13 , DG B:14 , DG B:23 , DG B:24
BINDING SITE FOR RESIDUE K A 103
08
AC8
SOFTWARE
DG A:2 , DG A:3 , DG A:10 , DG A:11 , K A:103 , DG B:14 , DG B:15 , DG B:22 , DG B:23 , K B:105
BINDING SITE FOR RESIDUE K A 104
09
AC9
SOFTWARE
DG A:1 , DG A:2 , DG A:11 , DG A:12 , K A:104 , DG B:15 , DG B:16 , DG B:21 , DG B:22 , K B:106
BINDING SITE FOR RESIDUE K B 105
10
BC1
SOFTWARE
DG A:1 , DG A:12 , DG B:16 , DT B:17 , DT B:19 , DG B:21 , K B:105 , HOH B:167 , HOH B:171
BINDING SITE FOR RESIDUE K B 106
11
BC2
SOFTWARE
DG G:73 , DG G:84 , K G:108 , DG H:88 , DT H:89 , DT H:91 , DG H:93 , HOH H:150 , HOH H:163
BINDING SITE FOR RESIDUE K H 107
12
BC3
SOFTWARE
DG G:73 , DG G:74 , DG G:83 , DG G:84 , K G:109 , DG H:87 , DG H:88 , DG H:93 , DG H:94 , K H:107
BINDING SITE FOR RESIDUE K G 108
13
BC4
SOFTWARE
DG G:74 , DG G:75 , DG G:82 , DG G:83 , K G:108 , K G:110 , DG H:86 , DG H:87 , DG H:94 , DG H:95
BINDING SITE FOR RESIDUE K G 109
14
BC5
SOFTWARE
DG G:75 , DG G:76 , DG G:81 , DG G:82 , K G:109 , K G:111 , DG H:85 , DG H:86 , DG H:95 , DG H:96
BINDING SITE FOR RESIDUE K G 110
15
BC6
SOFTWARE
DG G:76 , DT G:77 , DT G:79 , DG G:81 , K G:110 , HOH G:119 , HOH G:122 , DG H:85 , DG H:96
BINDING SITE FOR RESIDUE K G 111
16
BC7
SOFTWARE
DG E:52 , DT E:53 , DT E:55 , DG E:57 , K E:113 , HOH E:124 , DG F:61 , DG F:72
BINDING SITE FOR RESIDUE K E 112
17
BC8
SOFTWARE
DG E:51 , DG E:52 , DG E:57 , DG E:58 , K E:112 , K E:114 , DG F:61 , DG F:62 , DG F:71 , DG F:72
BINDING SITE FOR RESIDUE K E 113
18
BC9
SOFTWARE
DG E:50 , DG E:51 , DG E:58 , DG E:59 , K E:113 , K E:115 , DG F:62 , DG F:63 , DG F:70 , DG F:71
BINDING SITE FOR RESIDUE K E 114
19
CC1
SOFTWARE
DG E:49 , DG E:50 , DG E:59 , DG E:60 , K E:114 , DG F:63 , DG F:64 , DG F:69 , DG F:70 , K F:116
BINDING SITE FOR RESIDUE K E 115
20
CC2
SOFTWARE
DG E:49 , DG E:60 , K E:115 , DG F:64 , DT F:65 , DT F:67 , DG F:69 , HOH F:127 , HOH F:144
BINDING SITE FOR RESIDUE K F 116
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Show PDB file:
Asym.Unit (55 KB)
Header - Asym.Unit
Biol.Unit 1 (14 KB)
Header - Biol.Unit 1
Biol.Unit 2 (14 KB)
Header - Biol.Unit 2
Biol.Unit 3 (14 KB)
Header - Biol.Unit 3
Biol.Unit 4 (14 KB)
Header - Biol.Unit 4
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