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2GWN
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
THE STRUCTURE OF PUTATIVE DIHYDROOROTASE FROM PORPHYROMONAS GINGIVALIS.
Authors
:
M. E. Cuff, M. Borovilos, S. Moy, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date
:
04 May 06 (Deposition) - 06 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Porphyromonas Gingivalis, Dihydroorotase, Zinc-Binding Protein, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Cuff, M. Borovilos, S. Moy, A. Joachimiak
The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis.
To Be Published
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Hetero Components
(8, 22)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
GOL
2
Ligand/Ion
GLYCEROL
5
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
6
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
7
SO4
5
Ligand/Ion
SULFATE ION
8
ZN
2
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:63 , KCX A:149 , HIS A:181 , HIS A:239 , ZN A:602 , CAC A:603 , HOH A:976
BINDING SITE FOR RESIDUE ZN A 601
02
AC2
SOFTWARE
GLN A:63 , HIS A:65 , KCX A:149 , ASP A:313 , ZN A:601 , HOH A:976
BINDING SITE FOR RESIDUE ZN A 602
03
AC3
SOFTWARE
HIS A:65 , ASN A:97 , KCX A:149 , PHE A:151 , SER A:154 , SER A:155 , HIS A:181 , ZN A:601 , HOH A:820 , HOH A:857
BINDING SITE FOR RESIDUE CAC A 603
04
AC4
SOFTWARE
ARG A:6 , ALA A:38 , HOH A:866
BINDING SITE FOR RESIDUE CAC A 604
05
AC5
SOFTWARE
PRO A:334 , LEU A:335 , HIS A:338 , SER A:408 , HOH A:635
BINDING SITE FOR RESIDUE CL A 605
06
AC6
SOFTWARE
ARG A:439 , HOH A:800 , HOH A:910 , HOH A:955 , HOH A:1085
BINDING SITE FOR RESIDUE SO4 A 606
07
AC7
SOFTWARE
LYS A:198 , VAL A:442 , HIS A:443 , PRO A:444 , HOH A:663 , HOH A:724 , HOH A:995
BINDING SITE FOR RESIDUE SO4 A 607
08
AC8
SOFTWARE
SER A:-2 , THR A:441 , HOH A:641 , HOH A:1090
BINDING SITE FOR RESIDUE SO4 A 608
09
AC9
SOFTWARE
TYR A:218 , ARG A:219 , HOH A:911 , HOH A:980
BINDING SITE FOR RESIDUE SO4 A 609
10
BC1
SOFTWARE
ARG A:295 , GOL A:614 , HOH A:1017 , HOH A:1025
BINDING SITE FOR RESIDUE SO4 A 610
11
BC2
SOFTWARE
SER A:-2 , ASN A:-1 , CYS A:427 , ARG A:439 , HOH A:677
BINDING SITE FOR RESIDUE BME A 611
12
BC3
SOFTWARE
ILE A:134 , ILE A:137 , LYS A:138 , GLU A:173 , CYS A:174 , HOH A:1100
BINDING SITE FOR RESIDUE BME A 612
13
BC4
SOFTWARE
GLU A:168 , GLY A:172 , GLU A:173 , LEU A:318 , LEU A:319 , CYS A:405 , HOH A:1071 , HOH A:1093
BINDING SITE FOR RESIDUE GOL A 613
14
BC5
SOFTWARE
TRP A:270 , ARG A:295 , ARG A:299 , GLN A:349 , SO4 A:610 , HOH A:936 , HOH A:1017 , HOH A:1025 , HOH A:1092 , HOH A:1094
BINDING SITE FOR RESIDUE GOL A 614
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2gwnA02 (A:59-370,A:392-415)
2a: CATH_2gwnA01 (A:-2-58,A:377-391,A:416-437)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Porphyromonas gingivalis w83. Organism_taxid: 242619. Strain: w83.
(1)
1a
2gwnA02
A:59-370,A:392-415
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Porphyromonas gingivalis w83. Organism_taxid: 242619. Strain: w83.
(1)
2a
2gwnA01
A:-2-58,A:377-391,A:416-437
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (94 KB)
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